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Julien Gagneur

Munich School of Philosophy · DE
Area of research
Molecular Biology · Genetics
Research interest
Research interests include RNA Research and Splicing, RNA and protein synthesis mechanisms, RNA modifications and cancer, and Genomics and Chromatin Dynamics.
h-index
53
citations
16,291
works
241
NIH funding
primary concept
Biology
email

Recent publications

Unraveling undiagnosed rare disease cases by HiFi long-read genome sequencing
Genome Research 2025cited by 24position: middledoi
From computational models of the splicing code to regulatory mechanisms and therapeutic implications
Nature Reviews Genetics 2024cited by 28position: middledoi
Unravelling undiagnosed rare disease cases by HiFi long-read genome sequencing
medRxiv 2024cited by 20position: middledoi
Integration of variant annotations using deep set networks boosts rare variant association testing
Nature Genetics 2024cited by 18position: middledoi
Systematic assessment of COVID-19 host genetics using whole genome sequencing data
PLoS Pathogens 2024cited by 1position: middledoi
Epicardioid single-cell genomics uncovers principles of human epicardium biology in heart development and disease
Nature Biotechnology 2023cited by 81position: middledoi
Integration of variant annotations using deep set networks boosts rare variant association genetics
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 4position: middledoi
Transmicron: accurate prediction of insertion probabilities improves detection of cancer driver genes from transposon mutagenesis screens
Nucleic Acids Research 2023cited by 2position: lastdoi
Transcriptome-wide association study of coronary artery disease identifies novel susceptibility genes
Basic Research in Cardiology 2022cited by 53position: middledoi
Swarm Learning for decentralized and confidential clinical machine learning
Nature 2021cited by 822position: middledoi
Early IFN-α signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19
Immunity 2021cited by 257position: middledoi
Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment
Cell 2020cited by 1,595position: middledoi
Transcriptome-directed analysis for Mendelian disease diagnosis overcomes limitations of conventional genomic testing
Journal of Clinical Investigation 2020cited by 184position: middledoi
The Kipoi repository accelerates community exchange and reuse of predictive models for genomics
Nature Biotechnology 2019cited by 175position: lastdoi
Assessing predictions of the impact of variants on splicing in CAGI5
Human Mutation 2019cited by 26position: middledoi
Somatic alterations compromised molecular diagnosis of DOCK8 hyper-IgE syndrome caused by a novel intronic splice site mutation
Scientific Reports 2018cited by 14position: middledoi
The Genomic and Transcriptomic Landscape of a HeLa Cell Line
G3 Genes Genomes Genetics 2013cited by 482position: middledoi
Genotyping 1000 yeast strains by next-generation sequencing
BMC Genomics 2013cited by 53position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Oliver Stegle · Institut thématique Génétique, génomique et bioinformatique3 papers (2019–2024)Lars M. Steinmetz · European Molecular Biology Laboratory2 papers (2013–2013)Felix Brechtmann · Technical University of Munich2 papers (2023–2024)Manu M. Tekkedil · European Molecular Biology Laboratory2 papers (2013–2013)Kayla Meyer · German Cancer Research Center2 papers (2023–2024)Florian R. Hölzlwimmer · Technical University of Munich2 papers (2023–2024)Brian Clarke · German Cancer Research Center2 papers (2023–2024)Žiga Avsec · Google (United States)2 papers (2019–2019)Jun Cheng · Google DeepMind (United Kingdom)2 papers (2019–2019)Hakime Öztürk · German Cancer Research Center2 papers (2023–2024)Eva Holtkamp · Technical University of Munich2 papers (2023–2024)Magnus Wahlberg · German Cancer Research Center2 papers (2023–2024)Felix Munzlinger · German Cancer Research Center2 papers (2023–2024)Marcel Mück · German Cancer Research Center2 papers (2023–2024)Zhifen Chen · Technical University of Munich2 papers (2022–2024)E. Fritsch · European Molecular Biology Laboratory1 papers (2013–2013) · 1 papers (2018–2018)Isaäc J. Nijman · University Medical Center Utrecht1 papers (2018–2018) · 1 papers (2018–2018)Andrea K. Steiner · California Institute of Technology1 papers (2022–2022)