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Silvana Konermann

Palo Alto Institute ·
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Area of research
Molecular Biology · Biophysics
Research interest
Research interests include CRISPR and Genetic Engineering, RNA and protein synthesis mechanisms, Advanced biosensing and bioanalysis techniques, and Single-cell and spatial transcriptomics.
h-index
26
citations
23,260
works
63
NIH funding
primary concept
email

Recent publications

Scalable probe-based single-cell transcriptional profiling for virtual cell perturbation mapping and synthetic biology phenotyping
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 3position: middledoi
Virtual Cell Challenge: Toward a Turing test for the virtual cell
Cell 2025cited by 47position: middledoi
Megabase-scale human genome rearrangement with programmable bridge recombinases
Science 2025cited by 17position: middledoi
Site-specific DNA insertion into the human genome with engineered recombinases
Nature Biotechnology 2025cited by 8position: middledoi
A molecular cell atlas of mouse lemur, an emerging model primate
Nature 2025cited by 8position: middledoi
Mouse lemur cell atlas informs primate genes, physiology and disease
Nature 2025cited by 4position: middledoi
An organism-wide atlas of hormonal signaling based on the mouse lemur single-cell transcriptome
Nature Communications 2024cited by 10position: middledoi
DYRK1A promotes viral entry of highly pathogenic human coronaviruses in a kinase-independent manner
PLoS Biology 2023cited by 26position: middledoi
Genome-wide bidirectional CRISPR screens identify mucins as host factors modulating SARS-CoV-2 infection
Nature Genetics 2022cited by 142position: middledoi
Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
Nature Computational Science 2022cited by 47position: middledoi
CloneSifter: enrichment of rare clones from heterogeneous cell populations
BMC Biology 2020cited by 26position: middledoi
CloneRetriever: retrieval of rare clones from heterogeneous cell populations
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 2position: middledoi
DDIS-13. UNDERSTANDING GLIOBLASTOMA SUSCEPTIBILITY TO TOP2-TARGETING DRUGS FOR PERSONALIZED THERAPY
Neuro-Oncology 2018cited by 0position: middledoi
Genome-scale CRISPR-Cas9 knockout and transcriptional activation screening
Nature Protocols 2017cited by 1,329position: middledoi
Genome-scale activation screen identifies a lncRNA locus regulating a gene neighbourhood
Nature 2017cited by 445position: middledoi
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
Science 2016cited by 2,359position: middledoi
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector
bioRxiv (Cold Spring Harbor Laboratory) 2016cited by 46position: middledoi
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
Molecular Cell 2015cited by 1,241position: middledoi
Orthogonal gene knockout and activation with a catalytically active Cas9 nuclease
Nature Biotechnology 2015cited by 287position: lastdoi
Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex
Nature 2014cited by 2,925position: firstdoi
Crystal Structure of Cas9 in Complex with Guide RNA and Target DNA
Cell 2014cited by 2,333position: middledoi
DNA targeting specificity of RNA-guided Cas9 nucleases
Nature Biotechnology 2013cited by 4,876position: middledoi
Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity
Cell 2013cited by 3,363position: middledoi
Optical control of mammalian endogenous transcription and epigenetic states
Nature 2013cited by 811position: firstdoi
Double Nicking by RNA-Guided CRISPR Cas9 for Enhanced Genome Editing Specificity
Cell 2013cited by 94position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Feng Zhang · Broad Institute12 papers (2013–2017)Patrick D. Hsu · Southern California Institute of Architecture11 papers (2013–2025)Jonathan S. Gootenberg · Brigham and Women's Hospital9 papers (2013–2017)Omar O. Abudayyeh · Howard Hughes Medical Institute7 papers (2014–2017)Julia Joung · Massachusetts Institute of Technology7 papers (2014–2017)Alexandro E. Trevino · The University of Texas Rio Grande Valley4 papers (2013–2014)F. Ann Ran · Harvard University Press4 papers (2013–2014)David Scott · Raptamer Discovery Group (United States)3 papers (2013–2013)Eric S. Lander · Broad Institute3 papers (2016–2017)Kira S. Makarova · National Institutes of Health3 papers (2015–2016)Ekaterina Semenova · Rutgers, The State University of New Jersey3 papers (2015–2016)Leonid Minakhin · Thomas Jefferson University3 papers (2015–2016) · 3 papers (2014–2025)Luke A. Gilbert · City College of San Francisco3 papers (2025–2026)Eugene V. Koonin · United States National Library of Medicine3 papers (2015–2016) · 3 papers (2015–2016)Mark D. Brigham · Massachusetts Institute of Technology3 papers (2013–2017)Konstantin Severinov · Rutgers, The State University of New Jersey3 papers (2015–2016)Neville E. Sanjana · KTH Royal Institute of Technology2 papers (2017–2017)Laine Goudy · UCSF Helen Diller Family Comprehensive Cancer Center2 papers (2025–2026)
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