Vincent Daubin

Diversity and Evolution of Pigment Types in Marine<i>Synechococcus</i>Cyanobacteria

Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation

Phylogenetic reconciliation

Relative Time Constraints Improve Molecular Dating

Treerecs: an integrated phylogenetic tool, from sequences to reconciliations

Genome Evolution: Mutation Is the Main Driver of Genome Size in Prokaryotes

Gene transfers can date the tree of life

RecPhyloXML: a format for reconciled gene trees

Ecological networks to unravel the routes to horizontal transposon transfers

DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium

GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands

Genome-scale phylogenetic analysis finds extensive gene transfer among fungi

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

The Inference of Gene Trees with Species Trees

Reductive genome evolution at both ends of the bacterial population size spectrum

Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov.

A Bayesian Method for Analyzing Lateral Gene Transfer

Ribosomal proteins: Toward a next generation standard for prokaryotic systematics?

Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a linear chromid

Efficient Exploration of the Space of Reconciled Gene Trees

Lateral Gene Transfer from the Dead

Lateral gene transfer, rearrangement, reconciliation

Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations

Lateral gene transfer as a support for the tree of life

Evolution of gene neighborhoods within reconciled phylogenies

Modeling Gene Family Evolution and Reconciling Phylogenetic Discord