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Brian J. Haas

Broad Institute ·
Area of research
Radiation · Nuclear and High Energy Physics
Research interest
Research interests include Nuclear Physics and Applications, Nuclear physics research studies, Cancer Genomics and Diagnostics, and Bioinformatics and Genomic Networks.
h-index
80
citations
108,084
works
328
NIH funding
primary concept
email

Recent publications

Accurate strand-specific long-read transcript isoform discovery and quantification at bulk, single-cell, and single-nucleus resolution
bioRxiv (Cold Spring Harbor Laboratory) 2026cited by 0position: middledoi
Targeted in silico characterization of fusion transcripts in tumor and normal tissues via FusionInspector
Cell Reports Methods 2023cited by 30position: firstdoi
Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma
Nature Medicine 2021cited by 123position: middledoi
A community challenge to evaluate RNA-seq, fusion detection, and isoform quantification methods for cancer discovery
Cell Systems 2021cited by 38position: middledoi
Next-generation characterization of the Cancer Cell Line Encyclopedia
Nature 2019cited by 3,669position: middledoi
Accuracy assessment of fusion transcript detection via read-mapping and de novo fusion transcript assembly-based methods
Genome biology 2019cited by 685position: firstdoi
Targetable vulnerabilities in T- and NK-cell lymphomas identified through preclinical models
Nature Communications 2018cited by 113position: middledoi
A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors
Cell Reports 2017cited by 1,083position: middledoi
The neuropeptide NMU amplifies ILC2-driven allergic lung inflammation
Nature 2017cited by 626position: middledoi
Advances in Decoding Axolotl Limb Regeneration
Trends in Genetics 2017cited by 86position: firstdoi
A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation
Molecular Cell 2015cited by 235position: middledoi
Transcriptome profiling of the dynamic life cycle of the scypohozoan jellyfish Aurelia aurita
BMC Genomics 2015cited by 105position: middledoi
Measurement and analysis of the<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML"><mml:mmultiscripts><mml:mi mathvariant="normal">Am</mml:mi><mml:mprescripts/><mml:none/><mml:mrow><mml:mn>243</mml:mn></mml:mrow></mml:mmultiscripts></mml:math>neutron capture cross section at the n_TOF facility at CERN
Physical Review C 2014cited by 34position: middledoi
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Nature Protocols 2013cited by 9,059position: firstdoi
The Capsaspora genome reveals a complex unicellular prehistory of animals
Nature Communications 2013cited by 327position: middledoi
Distinctive Expansion of Potential Virulence Genes in the Genome of the Oomycete Fish Pathogen Saprolegnia parasitica
PLoS Genetics 2013cited by 196position: middledoi
Comparative Genomics of Recent Shiga Toxin-Producing Escherichia coli O104:H4: Short-Term Evolution of an Emerging Pathogen
mBio 2013cited by 85position: middledoi
Structure, function and diversity of the healthy human microbiome
Nature 2012cited by 11,854position: middledoi
A framework for human microbiome research
Nature 2012cited by 2,741position: middledoi
Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of <i>E</i> .  <i>gallinarum</i> and <i>E</i> .  <i>casseliflavus</i>
mBio 2012cited by 345position: middledoi
Genomic epidemiology of the <i>Escherichia coli</i> O104:H4 outbreaks in Europe, 2011
Proceedings of the National Academy of Sciences 2012cited by 277position: middledoi
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
Genome biology 2012cited by 264position: middledoi
How deep is deep enough for RNA-Seq profiling of bacterial transcriptomes?
BMC Genomics 2012cited by 241position: firstdoi
Measurement and resonance analysis of the<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" display="inline"><mml:msup><mml:mrow/><mml:mn>237</mml:mn></mml:msup></mml:math>Np neutron capture cross section
Physical Review C 2012cited by 30position: middledoi

Grants

I-Corps: Translation potential of a guidance system for needles used in computed tomography (CT)-guided medical procedures
NSF2446724$50,0002024–2026PIRePORTER

Frequent collaborators

Aviv Regev · Moscow Institute of Thermal Technology5 papers (2013–2023)Timothy L. Tickle · Broad Institute3 papers (2017–2023)Chad Nusbaum · Massachusetts Institute of Technology3 papers (2012–2013)Alexander Dobin · New York Proton Center2 papers (2019–2023)Bruce W. Birren · Broad Institute2 papers (2012–2012)Jonathan Livny · Broad Institute2 papers (2012–2012)Jennifer R. Wortman · Seres Therapeutics (United States)2 papers (2012–2013)Paul A. Godfrey · Massachusetts Institute of Technology2 papers (2012–2013)Allison Griggs · Broad Institute2 papers (2012–2013)Jessica L. Whited · Tufts University2 papers (2017–2017)Dirk Gevers · Johnson & Johnson (United States)2 papers (2012–2012)Nathalie Pochet · Albert Einstein College of Medicine2 papers (2013–2019)Bo Li · Yuhuangding Hospital2 papers (2013–2019) · 2 papers (2013–2017)Vijay K. Kuchroo · Harvard University1 papers (2017–2017)Joshua Orvis · University of North Carolina at Chapel Hill1 papers (2013–2013)Joel Bateman · Harvard Stem Cell Institute1 papers (2017–2017) · 1 papers (2012–2012)Christoph S. N. Klose · Humboldt-Universität zu Berlin1 papers (2017–2017)Francis G. Davis · Harvard Stem Cell Institute1 papers (2017–2017)