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Andrew Filby

Newcastle University · GB
🔎 Find collaborators in Immunology · Molecular Biology →
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Area of research
Immunology · Molecular Biology
Research interest
Research interests include Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, Immune Cell Function and Interaction, and Immunotherapy and Immune Responses.
h-index
40
citations
14,723
works
159
NIH funding
primary concept
Medicine
email

Recent publications

FIP200 regulates plasma B cell differentiation via mitochondrial and heme homeostasis.
2026cited by 0position: contributordoi
Intra-articular injection of autologous tolerogenic dendritic cells modifies the synovial immune landscape in rheumatoid and inflammatory arthritis
Annals of the Rheumatic Diseases 2026cited by 0position: contributordoi
Flow cytometry-based isolation of <i>Salmonella</i> -containing phagosomes combined with ultra-sensitive proteomics reveals novel insights into host-pathogen interactions
2025cited by 1position: contributordoi
A prenatal skin atlas reveals immune regulation of human skin morphogenesis
Nature 2024cited by 87position: middledoi
A prenatal skin atlas reveals immune regulation of human skin morphogenesis.
2024cited by 64position: contributordoi
Single-cell insights into immune dysregulation in rheumatoid arthritis flare versus drug-free remission.
2024cited by 27position: contributordoi
OPTIMAL: An OPTimized Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration.
2024cited by 12position: contributordoi
A novel channel invariant architecture for the segmentation of cells and nuclei in multiplexed images using InstanSeg
2024cited by 10position: contributordoi
A multi-biomarker micronucleus assay using imaging flow cytometry
Archives of Toxicology 2024cited by 7position: middledoi
Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19.
2024cited by 4position: contributordoi
Imaging mass cytometry analysis of Becker muscular dystrophy muscle samples reveals different stages of muscle degeneration.
2024cited by 4position: contributordoi
SCIP: A scalable, reproducible and open-source pipeline for morphological profiling of image cytometry and microscopy data.
2024cited by 3position: contributordoi
Guidelines for establishing a cytometry laboratory.
2024cited by 3position: contributordoi
A stagewise response to mitochondrial dysfunction in mitochondrial DNA maintenance disorders.
2024cited by 2position: contributordoi
A multi-biomarker micronucleus assay using imaging flow cytometry.
2024cited by 2position: contributordoi
Temporo-spatial cellular atlas of the regenerating alveolar niche in idiopathic pulmonary fibrosis
2024cited by 1position: contributordoi
<i>Ex-vivo</i> mouse precision cut tumour slices for modelling hepatocellular carcinoma; A 3Rs solution for at-scale drug screening
2024cited by 0position: contributordoi
Protocol for in vitro co-culture, proliferation, and cell cycle analyses of patient-derived leukemia cells.
2024cited by 0position: contributordoi
Distinct tissue-niche localization and function of synovial tissue myeloid DC subsets in health, and in active and remission Rheumatoid Arthritis
2024cited by 0position: contributordoi
Parkinson's disease neurons exhibit alterations in mitochondrial quality control proteins.
2023cited by 34position: contributordoi
Tissue factor expression in monocyte subsets during human immunothrombosis, endotoxemia and sepsis.
2023cited by 24position: contributordoi
GBMdeconvoluteR accurately infers proportions of neoplastic and immune cell populations from bulk glioblastoma transcriptomics data.
2023cited by 21position: contributordoi
Programmed cell death-1 receptor-mediated regulation of Tbet&lt;sup&gt;+&lt;/sup&gt;NK1.1&lt;sup&gt;-&lt;/sup&gt; innate lymphoid cells within the tumor microenvironment.
2023cited by 17position: contributordoi
<scp>OPTIMAL</scp> : An <scp>OPTimized</scp> Imaging Mass cytometry <scp>AnaLysis</scp> framework for benchmarking segmentation and data exploration
Cytometry Part A 2023cited by 16position: middledoi
Downregulation of MALAT1 is a hallmark of tissue and peripheral proliferative T cells in COVID-19.
2023cited by 12position: contributordoi
Hyperactive CREB subpopulations increase during therapy in pediatric B-lineage acute lymphoblastic leukemia.
2023cited by 6position: contributordoi
Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19
EBioMedicine 2023cited by 5position: middledoi
OPTIMAL: An OPTimised Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 3position: middledoi
Distinct lung cell signatures define the temporal evolution of diffuse alveolar damage in fatal COVID-19
medRxiv 2023cited by 2position: middledoi
Identification of a protein expression signature distinguishing early from organising diffuse alveolar damage in COVID-19 patients.
2023cited by 2position: contributordoi

Grants

No grants ingested yet.

Frequent collaborators

· 20 papers (2020–2026)Paul Rees · Massachusetts Institute of Technology18 papers (2013–2024)Anne E. Carpenter · Massachusetts Institute of Technology10 papers (2016–2022)John W. Wills · Swansea University8 papers (2021–2024)Huw D. Summers · Houston Methodist8 papers (2013–2022)Andrew J. Fisher · Newcastle upon Tyne Hospitals NHS Foundation Trust6 papers (2022–2023) · 6 papers (2018–2022)Luke Milross · Newcastle University6 papers (2022–2023)Sarah A. Teichmann · One Cell Systems (United States)6 papers (2019–2023) · 6 papers (2022–2023)David McDonald · Bioscience (China)6 papers (2017–2023) · 5 papers (2023–2023)Holger Hennig · Swansea University5 papers (2016–2020)Paul M. Kaye · University of York5 papers (2022–2023)Andrew J. Fisher · KU Leuven5 papers (2022–2023) · 4 papers (2023–2023)Thomas Blasi · Massachusetts Institute of Technology4 papers (2016–2017)Anne E. Carpenter · University of Nottingham4 papers (2020–2022)Catharien M. U. Hilkens · Newcastle University4 papers (2023–2023) · 4 papers (2023–2023)
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