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H. Bradley Shaffer

University of California, Los Angeles · US
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Area of research
Global and Planetary Change · Genetics
Research interest
Research interests include Amphibian and Reptile Biology, Genetic diversity and population structure, Turtle Biology and Conservation, and Genomics and Phylogenetic Studies.
h-index
73
citations
15,584
works
317
NIH funding
primary concept
email

Recent publications

Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories
Proceedings of the National Academy of Sciences 2023cited by 51position: middledoi
Harnessing iNaturalist to quantify hotspots of urban biodiversity: the Los Angeles case study
Frontiers in Ecology and Evolution 2023cited by 28position: lastdoi
The Earth BioGenome Project 2020: Starting the clock
Proceedings of the National Academy of Sciences 2022cited by 362position: middledoi
Landscape Genomics to Enable Conservation Actions: The California Conservation Genomics Project
Journal of Heredity 2022cited by 156position: firstdoi
Seizing the moment: The opportunity and relevance of the California Conservation Genomics Project to state and federal conservation policy
Journal of Heredity 2022cited by 48position: lastdoi
Applying stochastic and Bayesian integral projection modeling to amphibian population viability analysis
Ecological Applications 2022cited by 15position: middledoi
Genomic data reveal local endemism in Southern California Rubber Boas (Serpentes: Boidae, Charina) and the critical need for enhanced conservation actions
Molecular Phylogenetics and Evolution 2022cited by 3position: lastdoi
A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins
Proceedings of the National Academy of Sciences 2021cited by 210position: lastdoi
From Poison to Promise: The Evolution of Tetrodotoxin and Its Potential as a Therapeutic
Toxins 2021cited by 48position: lastdoi
Intended consequences statement
Conservation Science and Practice 2021cited by 15position: middledoi
Turtles and Tortoises Are in Trouble
Current Biology 2020cited by 351position: middledoi
Individual heterozygosity predicts translocation success in threatened desert tortoises
Science 2020cited by 118position: lastdoi
An empirical pipeline for choosing the optimal clustering threshold in RADseq studies
Molecular Ecology Resources 2019cited by 87position: lastdoi
Phylogenomics of the adaptive radiation of Triturus newts supports gradual ecological niche expansion towards an incrementally aquatic lifestyle
Molecular Phylogenetics and Evolution 2019cited by 76position: lastdoi
Global Conservation Status of Turtles and Tortoises (Order Testudines)
Chelonian Conservation and Biology 2018cited by 258position: middledoi
Genomewide <scp>SNP</scp> markers breathe new life into phylogeography and species delimitation for the problematic short‐necked turtles (Chelidae: <i>Emydura</i> ) of eastern Australia
Molecular Ecology 2018cited by 157position: middledoi
Genomic data recover previously undetectable fragmentation effects in an endangered amphibian
Molecular Ecology 2018cited by 88position: lastdoi
Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines)
Molecular Phylogenetics and Evolution 2017cited by 90position: firstdoi
Hybridization and endangered species protection in the molecular era
Molecular Ecology 2016cited by 178position: lastdoi
Do Ecological Niche Models Accurately Identify Climatic Determinants of Species Ranges?
The American Naturalist 2016cited by 135position: lastdoi
Exon capture optimization in amphibians with large genomes
Molecular Ecology Resources 2016cited by 82position: lastdoi
Conservation Genetics and Genomics of Amphibians and Reptiles
Annual Review of Animal Biosciences 2015cited by 93position: firstdoi
The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
Genome biology 2013cited by 328position: firstdoi
Parallel tagged amplicon sequencing reveals major lineages and phylogenetic structure in the <scp>N</scp>orth <scp>A</scp>merican tiger salamander (<i><scp>A</scp>mbystoma tigrinum</i>) species complex
Molecular Ecology 2012cited by 115position: middledoi
A new species of leopard frog (Anura: Ranidae) from the urban northeastern US
Molecular Phylogenetics and Evolution 2012cited by 20position: lastdoi

Grants

No grants ingested yet.

Frequent collaborators

Evan McCartney‐Melstad · Eureka Therapeutics (United States)6 papers (2015–2019)Erin Toffelmier · University of California, Los Angeles4 papers (2015–2022) · 2 papers (2022–2022)Beth Shapiro · Howard Hughes Medical Institute2 papers (2022–2022) · 2 papers (2015–2019)Peter Scott · Eckerd College2 papers (2020–2022)Genevieve G. Mount · University of California, Berkeley2 papers (2016–2017) · 2 papers (2022–2022)Phillip Q. Spinks · Consolidated Mosquito Abatement District2 papers (2017–2021)Christopher A. Searcy · University of Miami2 papers (2016–2022) · 2 papers (2022–2022)Russ Corbet-Detig · University of California, Santa Cruz1 papers (2022–2022)David W. Weisrock · University of Kentucky1 papers (2012–2012) · 1 papers (2012–2012)Joscha Beninde · Vrije Universiteit Amsterdam1 papers (2023–2023) · 1 papers (2022–2022)Hilton M. Oyamaguchi · Chestnut Hill College1 papers (2015–2015)Jannet K. Vu · Stony Brook University1 papers (2018–2018)Germar González · Yale University1 papers (2023–2023)Ben Wielstra · Leiden University1 papers (2019–2019)
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