Area of research
Infectious Diseases · Molecular Medicine
Research interest
Research interests include Antibiotic Resistance in Bacteria, Mycobacterium research and diagnosis, SARS-CoV-2 and COVID-19 Research, and Bacterial Identification and Susceptibility Testing.
An improved catalogue for whole-genome sequencing prediction of bedaquiline resistance in Mycobacterium tuberculosis using a reproducible algorithmic approach
The impact of different antimicrobial exposures on the gut microbiome in the ARMORD observational study
Social behaviours and contact patterns across the 2020/21, 2021/22 and 2022/23 winter seasons in the UK, and associations with symptoms
An improved catalogue for whole-genome sequencing prediction of bedaquiline resistance in
<i>M. tuberculosis</i>
using a reproducible algorithmic approach
Author response: The impact of different antimicrobial exposures on the gut microbiome in the ARMORD observational study
Quantitative measurement of antibiotic resistance in Mycobacterium tuberculosis reveals genetic determinants of resistance and susceptibility in a target gene approach
The impact of different antimicrobial exposures on the gut microbiome in the ARMORD observational study
The impact of different antimicrobial exposures on the gut microbiome in the ARMORD observational study
Effect of Covid-19 Vaccination on Transmission of Alpha and Delta Variants
The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: a genotypic analysis
Identification of host–pathogen-disease relationships using a scalable multiplex serology platform in UK Biobank
High fluoroquinolone resistance proportions among multidrug-resistant tuberculosis driven by dominant L2 Mycobacterium tuberculosis clones in the Mumbai Metropolitan Region
Health record hiccups-5,526 real-world time series with change points labelled by crowdsourced visual inspection.
SARS-CoV-2 within-host diversity and transmission.
Antimicrobial resistance in commensal opportunistic pathogens isolated from non-sterile sites can be an effective proxy for surveillance in bloodstream infections
Daily contact testing schools and colleges trial
Antimicrobial resistance determinants are associated with <i>Staphylococcus aureus</i> bacteraemia and adaptation to the hospital environment: a bacterial genome-wide association study
Genomic Epidemiology of Complex, Multispecies, Plasmid-Borne <i>bla</i> <sub>KPC</sub> Carbapenemase in <i>Enterobacterales</i> in the United Kingdom from 2009 to 2014
An ecological comparison of hospital-level antibiotic use and mortality in 36,124,372 acute/general medicine inpatients in England
SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex.
The Spatial Morphology of Intraluminal Thrombus Influences Type II Endoleak after Endovascular Repair of Abdominal Aortic Aneurysms
Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia.
Predictors of recurrence, early treatment failure and death from Staphylococcus aureus bacteraemia: Observational analyses within the ARREST trial.
WGS to determine the extent of Clostridioides difficile transmission in a high incidence setting in North Wales in 2015.
Antibiotic Review Kit for Hospitals (ARK-Hospital): study protocol for a stepped-wedge cluster-randomised controlled trial.
The Hospital Water Environment as a Reservoir for Carbapenem-Resistant Organisms Causing Hospital-Acquired Infections—A Systematic Review of the Literature
Some Synonymous and Nonsynonymous <i>gyrA</i> Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDR <i>sl</i> Assays
The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene <i>bla</i> <sub>KPC</sub>