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Graham Heimberg

Gene Therapy Laboratory · FR
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Area of research
Molecular Biology · Infectious Diseases
Research interest
Research interests include Single-cell and spatial transcriptomics, Cell Image Analysis Techniques, COVID-19 Clinical Research Studies, and SARS-CoV-2 and COVID-19 Research.
h-index
13
citations
2,467
works
30
NIH funding
primary concept
Computer science
email

Recent publications

Learning multi-cellular representations of single-cell transcriptomics data enables characterization of patient-level disease states
Cell Systems 2026cited by 1position: lastdoi
Learning Multi-cellular Representations of Single-Cell Transcriptomics Data Enables Characterization of Patient-Level Disease States
Lecture notes in computer science 2025cited by 1position: lastdoi
A cell atlas foundation model for scalable search of similar human cells
Nature 2024cited by 112position: firstdoi
Considerations for building and using integrated single-cell atlases
Nature Methods 2024cited by 43position: middledoi
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
Nature 2021cited by 875position: middledoi
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
Nature Medicine 2021cited by 372position: middledoi
Longitudinal proteomic analysis of severe COVID-19 reveals survival-associated signatures, tissue-specific cell death, and cell-cell interactions
Cell Reports Medicine 2021cited by 309position: middledoi
Low Dimensionality in Gene Expression Data Enables the Accurate Extraction of Transcriptional Programs from Shallow Sequencing
Cell Systems 2016cited by 179position: firstdoi
Transcription Factor Competition Allows Embryonic Stem Cells to Distinguish Authentic Signals from Noise
Cell Systems 2015cited by 87position: middledoi
Specific Gene Repression by CRISPRi System Transferred through Bacterial Conjugation
ACS Synthetic Biology 2014cited by 60position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Héctor Corrada Bravo · Kaiser Permanente South San Francisco Medical Center3 papers (2024–2026)Tony Kuo · Roche (Switzerland)3 papers (2024–2026)Hanchen Wang · Stanford University3 papers (2024–2026)Nathaniel Diamant · Acentech (United States)3 papers (2024–2026)Gabriele Scalia · Massachusetts Institute of Technology3 papers (2024–2026)Tommaso Biancalani · Gene Therapy Laboratory2 papers (2024–2026)Alsu Missarova · European Bioinformatics Institute2 papers (2025–2026)Aviv Regev · Moscow Institute of Thermal Technology2 papers (2024–2025)Lei S. Qi · Shanghai Jiao Tong University2 papers (2014–2015)Minsheng Hao · Tsinghua University2 papers (2025–2026)Edward De Brouwer · KU Leuven2 papers (2025–2026)Matt Thomson · California Institute of Technology2 papers (2015–2016)Maiia Shulman · Technical University of Munich1 papers (2024–2024)Derrick Lee · University of Pittsburgh Medical Center1 papers (2014–2014)Daryle J. DePianto · Gene Therapy Laboratory1 papers (2024–2024)Eric B. Wong · City College of San Francisco1 papers (2014–2014)Tobias Heigl · KU Leuven1 papers (2024–2024)Priyanka Dadlani · Howard Hughes Medical Institute1 papers (2014–2014)Susan Chen · ASML (United States)1 papers (2014–2014)Amanda J. Oliver · QIMR Berghofer Medical Research Institute1 papers (2024–2024)
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