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José L. McFaline‐Figueroa

Massachusetts Institute of Technology · US
Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include Biology, Computational biology, Chromatin, Gene, Genetics, and Multiplex.
h-index
citations
4,290
works
13
NIH funding
primary concept
email

Recent publications

Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs
Nature Biotechnology 2024cited by 52position: middledoi
Multiplex single-cell chemical genomics reveals the kinase dependence of the response to targeted therapy
Cell Genomics 2024cited by 17position: firstdoi
Predicting cellular responses to complex perturbations in high‐throughput screens
Molecular Systems Biology 2023cited by 256position: middledoi
High-capacity sample multiplexing for single cell chromatin accessibility profiling
BMC Genomics 2023cited by 3position: middledoi
A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens
Cell 2019cited by 652position: middledoi
Massively multiplex chemical transcriptomics at single-cell resolution
Science 2019cited by 395position: middledoi
A pooled single-cell genetic screen identifies regulatory checkpoints in the continuum of the epithelial-to-mesenchymal transition
Nature Genetics 2019cited by 198position: firstdoi
Joint profiling of chromatin accessibility and gene expression in thousands of single cells
Science 2018cited by 1,031position: middledoi
Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data
Molecular Cell 2018cited by 903position: middledoi
On the design of CRISPR-based single-cell molecular screens
Nature Methods 2018cited by 283position: middledoi
Minor Changes in Expression of the Mismatch Repair Protein MSH2 Exert a Major Impact on Glioblastoma Response to Temozolomide
Cancer Research 2015cited by 123position: firstdoi
Infection-induced colitis in mice causes dynamic and tissue-specific changes in stress response and DNA damage leading to colon cancer
Proceedings of the National Academy of Sciences 2012cited by 242position: middledoi
Defects in purine nucleotide metabolism lead to substantial incorporation of xanthine and hypoxanthine into DNA and RNA
Proceedings of the National Academy of Sciences 2012cited by 135position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Jay Shendure · Howard Hughes Medical Institute9 papers (2018–2024)Cole Trapnell · University of Washington9 papers (2018–2024)Dana L. Jackson · University of Washington6 papers (2018–2024)Riza M. Daza · University of Washington5 papers (2018–2023)Sanjay Srivatsan · Fred Hutch Cancer Center5 papers (2018–2024)Andrew J. Hill · Alameda Hospital5 papers (2018–2024)Jonathan S. Packer · Foresite (United States)4 papers (2018–2019)Frank J. Steemers · Instituto Profesional Diego Portales3 papers (2018–2019)Molly Gasperini · Allen Institute for Brain Science3 papers (2018–2024)Hannah A. Pliner · Bristol-Myers Squibb (Germany)3 papers (2018–2019)Andrew Adey · Washington University in St. Louis2 papers (2018–2018)Vijay Ramani · Gladstone Institutes2 papers (2018–2019)Koli Taghizadeh · Massachusetts Institute of Technology2 papers (2012–2012)Xiaojie Qiu · Stanford University2 papers (2018–2019)Peter C. Dedon · Massachusetts Institute of Technology2 papers (2012–2012)Delasa Aghamirzaie · Virginia Tech2 papers (2018–2018)Darren A. Cusanovich · University of Arizona2 papers (2018–2018) · 2 papers (2018–2019)Lauren M. Saunders · University of Washington2 papers (2019–2024)Beth Martin · Brotman Baty Institute2 papers (2019–2023)