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Chengjie Chen

South China Agricultural University · CN
Area of research
Molecular Biology · Plant Science
Research interest
Research interests include Plant Molecular Biology Research, Pineapple and bromelain studies, Genomics and Phylogenetic Studies, and Plant tissue culture and regeneration.
h-index
34
citations
23,495
works
104
NIH funding
primary concept
email

Recent publications

SuperDecode: An integrated toolkit for analyzing mutations induced by genome editing
Molecular Plant 2025cited by 12position: middledoi
HiMT: An integrative toolkit for assembling organelle genomes using HiFi reads
Plant Communications 2025cited by 11position: lastdoi
AcPI and AcAP3 coordinately regulate sepal-petal formation in pineapple
Horticultural Plant Journal 2025cited by 1position: middledoi
Water lily pond: a multiomics database for water lilies
Horticulture Research 2025cited by 1position: middledoi
ggVennDiagram: Intuitive Venn diagram software extended
iMeta 2024cited by 107position: middledoi
Spatially clustered type I interferon responses at injury borderzones
Nature 2024cited by 51position: middledoi
SapBase: A central portal for functional and comparative genomics of Sapindaceae species
Journal of Integrative Plant Biology 2024cited by 33position: middledoi
ScDB: A comprehensive database dedicated to <i>Saccharum</i>, facilitating functional genomics and molecular biology studies in sugarcane
Plant Biotechnology Journal 2024cited by 20position: middledoi
AcMYB266, a key regulator of the red coloration in pineapple peel: a case of subfunctionalization in tandem duplicated genes
Horticulture Research 2024cited by 15position: middledoi
The pineapple reference genome: Telomere‐to‐telomere assembly, manually curated annotation, and comparative analysis
Journal of Integrative Plant Biology 2024cited by 13position: middledoi
Diversification of FT-like genes in the PEBP family contributes to the variation of flowering traits in Sapindaceae species
Molecular Horticulture 2024cited by 11position: middledoi
SynGAP: a synteny-based toolkit for gene structure annotation polishing
Genome biology 2024cited by 10position: middledoi
Genome‐wide identification of <scp><i>XTH</i></scp> gene family in <i>Musa acuminata</i> and response analyses of <scp><i>MaXTHs</i></scp> and xyloglucan to low temperature
Physiologia Plantarum 2024cited by 9position: middledoi
The banana MaFLA27 confers cold tolerance partially through modulating cell wall remodeling
International Journal of Biological Macromolecules 2024cited by 7position: middledoi
The development and utilization of two SCAR markers linked to the resistance of banana (Musa spp. AAA) to Fusarium oxysporum f. sp. cubense race 4
Euphytica 2024cited by 4position: middledoi
TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining
Molecular Plant 2023cited by 3,321position: firstdoi
sRNAminer: A multifunctional toolkit for next-generation sequencing small RNA data mining in plants
Science Bulletin 2023cited by 41position: middledoi
MicroRNA482/2118 is lineage‐specifically involved in gibberellin signalling via the regulation of <i>GID1</i> expression by targeting noncoding <i>PHAS</i> genes and subsequently instigated phasiRNAs
Plant Biotechnology Journal 2023cited by 14position: middledoi
Genome-wide identification, phylogeny, and expression analysis of GRF transcription factors in pineapple (Ananas comosus)
Frontiers in Plant Science 2023cited by 9position: middledoi
Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars
Nature Genetics 2022cited by 235position: middledoi
A painless way to customize Circos plot: From data preparation to visualization using TBtools
iMeta 2022cited by 134position: firstdoi
SapBase (Sapinaceae Genomic DataBase): a central portal for functional and comparative genomics of Sapindaceae species
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 12position: middledoi
Species-specific regulatory pathways of small RNAs play sophisticated roles in flower development in Dimocarpus longan Lour.
Horticultural Plant Journal 2022cited by 11position: middledoi
Interactive Data Analyses Using TBtools
Integrative Bioinformatics 2022cited by 10position: firstdoi
Different responses of banana classical AGP genes and cell wall AGP components to low-temperature between chilling sensitive and tolerant cultivars
Plant Cell Reports 2022cited by 9position: middledoi
Biogenesis of reproductive <scp>PhasiRNAs</scp>: exceptions to the rules
Plant Biotechnology Journal 2022cited by 3position: middledoi
sRNAanno—a database repository of uniformly annotated small RNAs in plants
Horticulture Research 2021cited by 139position: firstdoi
MicroRNA482/2118, a miRNA superfamily essential for both disease resistance and plant development
New Phytologist 2021cited by 75position: middledoi
Nrf2 deficiency aggravates the kidney injury induced by subacute cadmium exposure in mice
Archives of Toxicology 2021cited by 54position: firstdoi
Changes in Homogalacturonan Metabolism in Banana Peel during Fruit Development and Ripening
International Journal of Molecular Sciences 2021cited by 22position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Rui Xia · South China Agricultural University25 papers (2017–2025)Yehua He · South China Agricultural University16 papers (2012–2025)Aiping Luan · South China Agricultural University10 papers (2016–2025)Yuanlong Liu · South China Agricultural University10 papers (2017–2024)Zaohai Zeng · South China Agricultural University9 papers (2018–2024)Junting Feng · South China Agricultural University7 papers (2016–2025)Tao Xie · Foshan University6 papers (2016–2020)Fengqi Wu · South China Agricultural University5 papers (2022–2025)Chunxiang Xu · South China Agricultural University5 papers (2021–2024)Houbin Chen · South China Agricultural University5 papers (2016–2024)Blake C. Meyers · University of California, Davis5 papers (2017–2023)Guanliang Li · Beijing Jiaotong University5 papers (2021–2023) · 5 papers (2019–2025)Chaoyang Liu · South China Agricultural University5 papers (2017–2023)Jianguo Li · South China Agricultural University4 papers (2017–2023)Jing Xu · Shanghai Polytechnic University4 papers (2019–2023)Shunquan Lin · South China Agricultural University4 papers (2012–2017)Jiawei Li · South China Agricultural University3 papers (2024–2025)Yuanyuan Xu · Jiaxing University3 papers (2017–2021) · 3 papers (2022–2024)