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Tandy Warnow

University of Illinois Urbana-Champaign · US
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Genomics and Phylogenetic Studies, Genetic diversity and population structure, Genome Rearrangement Algorithms, and Algorithms and Data Compression.
h-index
69
citations
24,566
works
402
NIH funding
primary concept
email

Recent publications

The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life
Frontiers in Science 2025cited by 19position: middledoi
Complexity of avian evolution revealed by family-level genomes
Nature 2024cited by 270position: middledoi
Phylogenomic branch length estimation using quartets
Bioinformatics 2023cited by 33position: middledoi
Why sequence all eukaryotes?
Proceedings of the National Academy of Sciences 2022cited by 121position: middledoi
Multispecies Coalescent: Theory and Applications in Phylogenetics
Annual Review of Ecology Evolution and Systematics 2021cited by 91position: lastdoi
TIPP2: metagenomic taxonomic profiling using phylogenetic markers
Bioinformatics 2021cited by 36position: lastdoi
A roadmap for global synthesis of the plant tree of life
American Journal of Botany 2018cited by 42position: middledoi
Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
Molecular Biology and Evolution 2017cited by 69position: middledoi
Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: <i>Columbicola</i> )
Systematic Biology 2017cited by 29position: middledoi
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
Genome Biology and Evolution 2016cited by 217position: middledoi
A comparative study of SVDquartets and other coalescent-based species tree estimation methods
BMC Genomics 2015cited by 190position: lastdoi
Weighted Statistical Binning: Enabling Statistically Consistent Genome-Scale Phylogenetic Analyses
PLoS ONE 2015cited by 120position: lastdoi
Phylogenomic analyses data of the avian phylogenomics project
GigaScience 2015cited by 108position: middledoi
Phylogenomic species tree estimation in the presence of incomplete lineage sorting and horizontal gene transfer
BMC Genomics 2015cited by 84position: lastdoi
Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds”
Science 2015cited by 53position: middledoi
ASTRAL: genome-scale coalescent-based species tree estimation
Bioinformatics 2014cited by 1,412position: lastdoi
Phylotranscriptomic analysis of the origin and early diversification of land plants
Proceedings of the National Academy of Sciences 2014cited by 1,336position: middledoi
Data access for the 1,000 Plants (1KP) project
GigaScience 2014cited by 606position: middledoi
Statistical binning enables an accurate coalescent-based estimation of the avian tree
Science 2014cited by 287position: lastdoi

Grants

Collaborative Research: OAC Core: Cyber-Infrastructure for Community Detection, Extraction, and Search in Large Networks
NSF2402559$398,0002024–2027PIRePORTER
IIBR Informatics: Advancing Bioinformatics Methods using Ensembles of Profile Hidden Markov Models
NSF2006069$500,0002020–2025PIRePORTER
ABI Innovation: New methods for multiple sequence alignment with improved accuracy and scalability
NSF1458652$861,6252015–2021PIRePORTER
III: AF: Medium: Collaborative Research: Scalable and Highly Accurate Methods for Metagenomics
NSF1513629$626,7112015–2020PIRePORTER
AitF: Full: Collaborative Research: Graph-theoretic algorithms to improve phylogenomic analyses
NSF1535977$360,0002015–2020PIRePORTER
Collaborative Research: Novel Methodologies for Genome-scale Evolutionary Analysis of Multi-locus data
NSF1461364$246,3322014–2016PIRePORTER
Collaborative Research: Novel Methodologies for Genome-scale Evolutionary Analysis of Multi-locus data
NSF1062335$349,9992011–2014PIRePORTER
Collaborative Research: Large-scale simultaneous multiple alignment and phylogeny estimation
NSF0733029$1,590,2602007–2014PIRePORTER
Information Technology Research (ITR): Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics
NSF0715370$2,080,5842006–2010PIRePORTER
Information Technology Research (ITR): Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics
NSF0331654$2,903,7342003–2007PIRePORTER
Information Technology Research (ITR): Building the Tree of Life -- A National Resource for Phyloinformatics and Computational Phylogenetics
NSF0331453$839,2432003–2009PIRePORTER
Collaborative Research: ITR/AP Reconstructing Complex Evolutionary Histories
NSF0121680$1,707,4602001–2009PIRePORTER
`ITR/AP: Collaborative Research: Exploring the Tree of Life
NSF0121682$784,9582001–2005PIRePORTER
NSF Young Investigator: Computational Problems in Evolutionary Tree Construction
NSF0096275$8,7002000–2000PIRePORTER
NSF Young Investigator: Computational Problems in Evolutionary Tree Construction
NSF9457800$275,0001994–2000PIRePORTER

Frequent collaborators

Siavash Mirarab · Jacobs (United States)10 papers (2014–2023)Md. Shamsuzzoha Bayzid · Bangladesh University of Engineering and Technology3 papers (2014–2015)Ruth Davidson · University of Illinois Urbana-Champaign2 papers (2015–2015)Bret M. Boyd · University of Florida2 papers (2017–2017)Nam Nguyen · Synthetic Biologics (United States)2 papers (2017–2017)Kevin P. Johnson · University of Illinois Urbana-Champaign2 papers (2017–2017)Bastien Boussau · Université Claude Bernard Lyon 12 papers (2014–2015)Carsten Rahbek · King University2 papers (2015–2018)Julie M. Allen · University of Florida2 papers (2017–2017)Pranjal Vachaspati · University of Illinois Urbana-Champaign2 papers (2015–2017)Scott M. Villa · Davidson College1 papers (2017–2017)David L. Reed · University of Florida1 papers (2017–2017)Andrew D. Sweet · University of Illinois Urbana-Champaign1 papers (2017–2017)Davide Pisani · University of Bristol1 papers (2016–2016)Scott V. Edwards · Institut de Biologia Evolutiva1 papers (2015–2015)Félix Forest · Freie Universität Berlin1 papers (2018–2018)Nidhi Shah · Dartmouth College1 papers (2021–2021)Kevin J. Peterson · Dartmouth College1 papers (2016–2016)Yasamin Tabatabaee · University of Illinois Urbana-Champaign1 papers (2023–2023)Erin K. Molloy · University of Maryland, College Park1 papers (2021–2021)