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Carol L. Thompson

Allen Institute for Brain Science · US
Area of research
Molecular Biology · Endocrine and Autonomic Systems
Research interest
Research interests include Single-cell and spatial transcriptomics, Circadian rhythm and melatonin, Vietnamese History and Culture Studies, and Neuroinflammation and Neurodegeneration Mechanisms.
h-index
42
citations
15,746
works
169
NIH funding
primary concept
Medicine
email

Recent publications

Insights and priorities from the 2025 private funders’ Parkinson's disease and related disorders large footprint data interoperability summit
Journal of Parkinson s Disease 2026cited by 0position: middledoi
Integrated multimodal cell atlas of Alzheimer’s disease
Nature Neuroscience 2024cited by 234position: middledoi
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
Nature 2023cited by 1,000position: middledoi
A high-resolution transcriptomic and spatial atlas of cell types in the whole mouse brain
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 138position: middledoi
Integrated multimodal cell atlas of Alzheimer’s disease
Research Square 2023cited by 63position: middledoi
A guide to the BRAIN Initiative Cell Census Network data ecosystem
PLoS Biology 2023cited by 51position: middledoi
Integrated multimodal cell atlas of Alzheimer’s disease
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 40position: middledoi
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia
Proceedings of the National Academy of Sciences 2022cited by 31position: middledoi
The BRAIN Initiative Cell Census Network Data Ecosystem: A User’s Guide
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 7position: middledoi
Survey of spiking in the mouse visual system reveals functional hierarchy
Nature 2021cited by 645position: middledoi
Transcriptional network orchestrating regional patterning of cortical progenitors
Proceedings of the National Academy of Sciences 2021cited by 55position: middledoi
Single Cell Enhancer Activity Maps Neuronal Lineages in Embryonic Mouse Basal Ganglia
bioRxiv (Cold Spring Harbor Laboratory) 2021cited by 2position: middledoi
Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors
bioRxiv (Cold Spring Harbor Laboratory) 2020cited by 4position: middledoi
A large-scale standardized physiological survey reveals functional organization of the mouse visual cortex
Nature Neuroscience 2019cited by 322position: middledoi
A survey of spiking activity reveals a functional hierarchy of mouse corticothalamic visual areas
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 69position: middledoi
Biological variation in the sizes, shapes and locations of visual cortical areas in the mouse
PLoS ONE 2019cited by 25position: lastdoi
A large-scale, standardized physiological survey reveals higher order coding throughout the mouse visual cortex
bioRxiv (Cold Spring Harbor Laboratory) 2018cited by 152position: middledoi
Aberrant Cortical Activity in Multiple GCaMP6-Expressing Transgenic Mouse Lines
eNeuro 2017cited by 265position: middledoi
Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation
Neuron 2017cited by 56position: middledoi
Aberrant Cortical Activity In Multiple GCaMP6-Expressing Transgenic Mouse Lines
bioRxiv (Cold Spring Harbor Laboratory) 2017cited by 21position: middledoi
A Single-Cell Roadmap of Lineage Bifurcation in Human ESC Models of Embryonic Brain Development
Cell stem cell 2016cited by 134position: middledoi
A High-Resolution Spatiotemporal Atlas of Gene Expression of the Developing Mouse Brain
Neuron 2014cited by 365position: firstdoi
CORTECON: A Temporal Transcriptome Analysis of In Vitro Human Cerebral Cortex Development from Human Embryonic Stem Cells
Neuron 2014cited by 220position: middledoi
Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system
Nucleic Acids Research 2012cited by 851position: middledoi

Grants

MRI/RUI: Acquisition of an Inductively Coupled Plasma Atomic Emission Spectrometer (ICP-AES)
NSF0320965$107,7012003–2006PIRePORTER
Student-Originated Studies
NSF7705128$22,9001977–1978PIRePORTER

Frequent collaborators

Michael Hawrylycz · Allen Institute5 papers (2012–2022)Rinaldo Catta-Preta · University of California, Davis4 papers (2020–2022)Alex S. Nord · University of California, Davis4 papers (2020–2022)Hongkui Zeng · Allen Institute for Brain Science4 papers (2020–2022)John L.R. Rubenstein · University of California, San Francisco4 papers (2020–2022)Athéna R. Ypsilanti · University of California, San Francisco3 papers (2020–2022)Anna Noren Rubin · University of California, San Francisco2 papers (2021–2022)Kartik Pattabiraman · Yale University2 papers (2020–2021) · 2 papers (2020–2021)Iva Zdilar · University of California, Davis2 papers (2021–2022)Ian Jones · The Geneva Foundation2 papers (2020–2021)Boaz P. Levi · Allen Institute for Brain Science2 papers (2014–2017)Christopher S. McGinnis · Stanford University2 papers (2021–2022)Zev J. Gartner · Berkeley College2 papers (2021–2022)Luis Puelles · Indiana University School of Medicine2 papers (2021–2022)Ivan Jurić · University of California, Davis2 papers (2020–2021) · 2 papers (2021–2022)Iros Barozzi · University Hospital of Zurich2 papers (2020–2021)Ke Tang · Nanchang University2 papers (2020–2021)Gabriel L. McKinsey · University of California, San Francisco2 papers (2021–2022)