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Ricardo O. Ramirez Flores

European Bioinformatics Institute · GB
Area of research
Molecular Biology · Health, Toxicology and Mutagenesis
Research interest
Research interests include Single-cell and spatial transcriptomics, Bioinformatics and Genomic Networks, Gene Regulatory Network Analysis, and Gene expression and cancer classification.
h-index
20
citations
4,155
works
58
NIH funding
primary concept
Medicine
email

Recent publications

Cold and hot fibrosis define clinically distinct cardiac pathologies
Cell Systems 2025cited by 17position: middledoi
Gene regulatory network inference in the era of single-cell multi-omics
Nature Reviews Genetics 2023cited by 436position: middledoi
Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 6position: firstdoi
decoupleR: ensemble of computational methods to infer biological activities from omics data
Bioinformatics Advances 2022cited by 954position: middledoi
Spatial multi-omic map of human myocardial infarction
Nature 2022cited by 660position: middledoi
Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data
Nature Communications 2022cited by 562position: middledoi
Explainable multiview framework for dissecting spatial relationships from highly multiplexed data
Genome biology 2022cited by 259position: middledoi
The spatial transcriptomic landscape of the healing mouse intestine following damage
Nature Communications 2022cited by 125position: middledoi
B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing
Immunity 2022cited by 95position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Julio Sáez-Rodríguez · European Bioinformatics Institute6 papers (2022–2023)Daniel Dimitrov · German Cancer Research Center3 papers (2022–2023)Sophia Müller‐Dott · Heidelberg University2 papers (2022–2023)Pau Badia-i-Mompel · Heidelberg University2 papers (2022–2023)Aurélien Dugourd · Heidelberg University2 papers (2022–2022)Jovan Tanevski · Heidelberg University1 papers (2022–2022)Oscar E. Diaz · The Francis Crick Institute1 papers (2022–2022)Kumar Parijat Tripathi · University of Cologne1 papers (2022–2022)Gustavo Monasterio · Karolinska University Hospital1 papers (2022–2022)Celina Geiß · University of Zurich1 papers (2022–2022)Charlotte Boys · Heidelberg University1 papers (2022–2022)Christian H. Holland · TU Dortmund University1 papers (2022–2022)Katja Selin · Karolinska Institutet1 papers (2022–2022)Jesús Vélez Santiago · Heidelberg University1 papers (2022–2022)Attila Gábor · Heidelberg University1 papers (2022–2022)James S. Nagai · RWTH Aachen University1 papers (2022–2022) · 1 papers (2022–2022)Joakim Lundeberg · Khyber Teaching Hospital1 papers (2022–2022)Martín Garrido‐Rodríguez · European Bioinformatics Institute1 papers (2022–2022)Ivan G. Costa · RWTH Aachen University1 papers (2022–2022)