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Shinji Fukuda

Yamagata University · JP
Area of research
Molecular Biology · Infectious Diseases
Research interest
Research interests include Gut microbiota and health, Diet and metabolism studies, Probiotics and Fermented Foods, and Clostridium difficile and Clostridium perfringens research.
h-index
56
citations
23,934
works
387
NIH funding
primary concept
Medicine
email

Recent publications

A genetic toolkit for the human gut bacterium Mediterraneibacter gnavus identifies capsular polysaccharides as a competitive colonization factor.
2026cited by 0position: contributordoi
Development of a monoclonal antibody-based approach for selective enrichment of target <i>Bifidobacterium longum</i> from a complex fecal community.
2026cited by 0position: contributordoi
Complete genome sequence of <i>Solobacterium moorei</i> 10714-02 isolated from the stool of a human colorectal cancer patient.
2026cited by 0position: contributordoi
Acarbose redirects gut microbiome utilization of dietary carbohydrates to suppress anaphylaxis in mice.
2026cited by 0position: contributordoi
Author Correction: Acarbose redirects gut microbiome utilization of dietary carbohydrates to suppress anaphylaxis in mice.
2026cited by 0position: contributordoi
Dietary amino acids regulate Salmonella colonization via microbiota-dependent mechanisms in the mouse gut.
2025cited by 7position: contributordoi
Potential Roles of Exogenous Proteases and Lipases as Prebiotics.
2025cited by 5position: contributordoi
Lubiprostone in chronic kidney disease: Insights into mitochondrial function and polyamines from a randomized phase 2 clinical trial.
2025cited by 2position: contributordoi
Associations between food consumption with T cell activation and antibody responses following SARS-CoV-2 mRNA vaccination.
2025cited by 0position: contributordoi
Development of the genetic toolkit identifies capsular polysaccharides as a competitive colonization factor in <i>Ruminococcus gnavus</i>
2025cited by 0position: contributordoi
Ecologically robust gut environment associated with personalized metabolic responses in a Japanese cohort.
2025cited by 0position: contributordoi
Synbiotic combination of &lt;i&gt;Bifidobacterium longum&lt;/i&gt; BB536 and lactulose improves the presenteeism of healthy adults associated with aromatic lactic acids - A single-arm, open-label study.
2025cited by 0position: contributordoi
Dynamics of the gut microbiome in FAP patients undergoing intensive endoscopic reduction of polyp burden.
2025cited by 0position: contributordoi
Gut microbial factors predict disease severity in a mouse model of multiple sclerosis.
2024cited by 30position: contributordoi
Barley β-glucan consumption improves glucose tolerance by increasing intestinal succinate concentrations.
2024cited by 5position: contributordoi
Prebiotic inulin ameliorates SARS-CoV-2 infection in hamsters by modulating the gut microbiome.
2024cited by 5position: contributordoi
A comparative study on dietary diversity and gut microbial diversity in children with autism spectrum disorder, attention-deficit hyperactivity disorder, their neurotypical siblings, and non-related neurotypical volunteers: a cross-sectional study.
2024cited by 5position: contributordoi
Intestinal metabolites predict treatment resistance of patients with depression and anxiety.
2024cited by 4position: contributordoi
A stress sensor, IRE1α, is required for bacterial-exotoxin-induced interleukin-1β production in tissue-resident macrophages.
2024cited by 4position: contributordoi
An inhibitory immunoreceptor Allergin-1 regulates the intestinal dysbiosis and barrier function in mice.
2024cited by 3position: contributordoi
Genetic mutation in <i>Escherichia coli</i> genome during adaptation to the murine intestine is optimized for the host diet.
2024cited by 3position: contributordoi
Effect of varying temperature increases on the microbial community of Pleistocene and Holocene permafrost
Polar Science 2024cited by 2position: contributordoi
Complete genome sequence of <i>Mediterraneibacter gnavus</i> strain RI1, isolated from human feces.
2024cited by 1position: contributordoi
Complete genome sequence of <i>Solobacterium moorei</i> JCM 10645<sup>T</sup> isolated from a human stool sample.
2024cited by 1position: contributordoi
Development of a Specialized Method for Simultaneous Quantification of Functional Intestinal Metabolites by GC/MS-Based Metabolomics.
2024cited by 0position: contributordoi
Complete genome sequence of <i>Bulleidia</i> sp. 10714-15 isolated from human colon cancer patients.
2024cited by 0position: contributordoi
Dectin-1 signaling on colonic γδ T cells promotes psychosocial stress responses
Nature Immunology 2023cited by 86position: middledoi
Dectin-1 signaling on colonic γδ T cells promotes psychosocial stress responses.
2023cited by 77position: contributordoi
Bacterial induction of B cell senescence promotes age-related changes in the gut microbiota.
2023cited by 55position: contributordoi
Alternative stable states, nonlinear behavior, and predictability of microbiome dynamics.
2023cited by 48position: contributordoi

Grants

No grants ingested yet.

Frequent collaborators

· 69 papers (2019–2026) · 12 papers (2019–2025)Takuji Yamada · Ultizyme International (Japan)12 papers (2019–2025)Akiyoshi Hirayama · Keio University10 papers (2020–2026) · 10 papers (2020–2026)Kazuharu Arakawa · National Institutes of Natural Sciences10 papers (2020–2026)Jiayue Yang · University of Illinois Urbana-Champaign7 papers (2021–2026)S. Murakami · Keio University6 papers (2020–2025)N. Obana · University of Tsukuba5 papers (2021–2026)Koji Hase · Fukushima University5 papers (2012–2022)Hiroshi Ohno · RIKEN Center for Integrative Medical Sciences4 papers (2012–2024)Isaiah Song · Keio University4 papers (2023–2026)Shinichi Yachida · Osaka International Cancer Institute4 papers (2019–2025)Hirokazu Toju · Kyoto University4 papers (2020–2023)Yuichiro Nishimoto · Metabologenomics, Inc.4 papers (2020–2023)Norihisa Kato · Hiroshima University4 papers (2021–2025)Thanutchaporn Kumrungsee · Hiroshima University4 papers (2021–2025)Takeshi Ichinohe · Tokyo Medical University4 papers (2022–2023) · 4 papers (2020–2021)Sayaka Mizutani · Juntendo University4 papers (2019–2025)