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Michael M. Hoffman

University Health Network ·
Area of research
Molecular Biology · Cancer Research
Research interest
Research interests include Genomics and Chromatin Dynamics, Cancer Genomics and Diagnostics, Epigenetics and DNA Methylation, and Genomics and Phylogenetic Studies.
h-index
37
citations
16,782
works
171
NIH funding
primary concept
email

Recent publications

TRIPOD+AI statement: updated guidance for reporting clinical prediction models that use regression or machine learning methods: a Korean translation
The Ewha Medical Journal 2025cited by 4position: middledoi
TRIPOD+AI statement: updated guidance for reporting clinical prediction models that use regression or machine learning methods
BMJ 2024cited by 1,854position: middledoi
Metrics reloaded: recommendations for image analysis validation
Nature Methods 2024cited by 380position: middledoi
Understanding metric-related pitfalls in image analysis validation
Nature Methods 2024cited by 166position: middledoi
Understanding metric-related pitfalls in image analysis validation
IT University Of Copenhagen (IT University of Copenhagen) 2023cited by 20position: middledoi
GA4GH: International policies and standards for data sharing across genomic research and healthcare
Cell Genomics 2021cited by 290position: middledoi
Reproducibility standards for machine learning in the life sciences
Nature Methods 2021cited by 218position: middledoi
Sharing biological data: why, when, and how
FEBS Letters 2021cited by 73position: lastdoi
Transparency and reproducibility in artificial intelligence
Nature 2020cited by 489position: middledoi
Opportunities and obstacles for deep learning in biology and medicine
Journal of The Royal Society Interface 2018cited by 2,213position: middledoi
Sensitive tumour detection and classification using plasma cell-free DNA methylomes
Nature 2018cited by 1,010position: middledoi
Extending reference assembly models
Genome Biology 2015cited by 199position: middledoi
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression
Genome Research 2015cited by 98position: middledoi
Comparative analysis of metazoan chromatin organization
Nature 2014cited by 448position: middledoi
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression
bioRxiv (Cold Spring Harbor Laboratory) 2014cited by 6position: middledoi
Integrative annotation of chromatin elements from ENCODE data
Nucleic Acids Research 2012cited by 619position: firstdoi

Grants

Improved Real-time Audio Interface for Human-Computer Interaction
NSF9405286$123,7811995–1999PIRePORTER

Frequent collaborators

William Stafford Noble · University of Washington3 papers (2012–2015)Jeffrey A. Bilmes · University of Washington3 papers (2012–2015)Maxwell W. Libbrecht · Simon Fraser University2 papers (2014–2015)David M. Gilbert · Hebrew University of Jerusalem2 papers (2014–2015)Ferhat Ay · La Jolla Institute for Immunology2 papers (2014–2015)Marie Lisandra Zepeda Mendoza · University of Birmingham1 papers (2015–2015)Valérie Schneider · National Center for Biotechnology Information1 papers (2015–2015)Javier Herrero · London Cancer1 papers (2015–2015)Benjamin J. Heil · California University of Pennsylvania1 papers (2021–2021)Bronwen Aken · European Bioinformatics Institute1 papers (2015–2015)Casey S. Greene · University of Colorado System1 papers (2021–2021)Wout Bittremieux · University of Antwerp1 papers (2021–2021)Michael C. Schatz · Center for Inherited Blood Disorders1 papers (2015–2015)Ewan Birney · Bioinformatics Institute1 papers (2012–2012)Melissa Haendel · Twitter (United States)1 papers (2021–2021)Karyn Meltz Steinberg · Geisinger Medical Center1 papers (2015–2015)Robert S. Harris · University of Dundee1 papers (2012–2012)Aaron R. Quinlan · University of Utah1 papers (2015–2015)Samantha L. Wilson · McMaster University1 papers (2021–2021)Richard Durbin · University of Cambridge1 papers (2015–2015)