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Ernest Fraenkel

Massachusetts Institute of Technology · US
Area of research
Molecular Biology · Neurology
Research interest
Research interests include Biology, Computational biology, Neuroscience, Computer science, Medulloblastoma, and Transcriptome.
h-index
citations
7,794
works
68
NIH funding
primary concept
email

Recent publications

An integrative systems-biology approach defines mechanisms of Alzheimer’s disease neurodegeneration
Nature Communications 2025cited by 17position: lastdoi
TDP-43 loss induces cryptic polyadenylation in ALS/FTD
Nature Neuroscience 2025cited by 16position: middledoi
A metabolic atlas of mouse aging
Cell Metabolism 2025cited by 9position: middledoi
Intersecting impact of CAG repeat and huntingtin knockout in stem cell-derived cortical neurons
Neurobiology of Disease 2025cited by 4position: middledoi
Comprehensive Proteomics Metadata and Integrative Web Portals Facilitate Sharing and Integration of LINCS Multiomics Data
Molecular & Cellular Proteomics 2025cited by 1position: middledoi
Intersecting impact of CAG repeat and Huntingtin knockout in stem cell-derived cortical neurons
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 1position: middledoi
Selective CDK7 Inhibition Suppresses Cell Cycle Progression and MYC Signaling While Enhancing Apoptosis in Therapy-resistant Estrogen Receptor–positive Breast Cancer
Clinical Cancer Research 2024cited by 34position: middledoi
Developmental basis of SHH medulloblastoma heterogeneity
Nature Communications 2024cited by 27position: lastdoi
Transcriptomic changes in oligodendrocytes and precursor cells associate with clinical outcomes of Parkinson’s disease
Molecular Brain 2024cited by 27position: middledoi
Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage
Nature Communications 2024cited by 14position: middledoi
Integration of transcriptomics, proteomics and loss-of-function screening reveals WEE1 as a target for combination with dasatinib against proneural glioblastoma
Cancer Letters 2024cited by 7position: middledoi
Author Correction: TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A
Nature 2024cited by 4position: middledoi
Author Correction: Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage
Nature Communications 2024cited by 1position: middledoi
Dictionary of immune responses to cytokines at single-cell resolution
Nature 2023cited by 323position: middledoi
Large-scale differentiation of iPSC-derived motor neurons from ALS and control subjects
Neuron 2023cited by 85position: middledoi
Circular extrachromosomal DNA promotes tumor heterogeneity in high-risk medulloblastoma
Nature Genetics 2023cited by 62position: middledoi
Adaptive bias correction for improved subseasonal forecasting
Nature Communications 2023cited by 40position: middledoi
TDP-43 loss and ALS-risk SNPs drive mis-splicing and depletion of UNC13A
Nature 2022cited by 499position: middledoi
Answer ALS, a large-scale resource for sporadic and familial ALS combining clinical and multi-omics data from induced pluripotent cell lines
Nature Neuroscience 2022cited by 153position: middledoi
Huntington disease oligodendrocyte maturation deficits revealed by single-nucleus RNAseq are rescued by thiamine-biotin supplementation
Nature Communications 2022cited by 74position: middledoi
Single cell metabolism: current and future trends
Metabolomics 2022cited by 57position: middledoi
Cell environment shapes TDP-43 function with implications in neuronal and muscle disease
Communications Biology 2022cited by 50position: middledoi
A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses
Communications Biology 2022cited by 36position: middledoi
Sub-seasonal Prediction of Central European Summer Heatwaves with Linear and Random Forest Machine Learning Models
2022cited by 4position: middledoi
Predicting Central European summer heatwaves with Machine Learning
2022cited by 0position: middledoi
Genome-scale screens identify factors regulating tumor cell responses to natural killer cells
Nature Genetics 2021cited by 96position: middledoi
An integrated multi-omic analysis of iPSC-derived motor neurons from C9ORF72 ALS patients
iScience 2021cited by 49position: middledoi
Identifying Patterns of ALS Progression from Sparse Longitudinal Data
medRxiv 2021cited by 6position: lastdoi
P04.04 Optimizing dasatinib for glioblastoma treatment
Neuro-Oncology 2021cited by 1position: middledoi
Aberrant Development Corrected in Adult-Onset Huntington's Disease iPSC-Derived Neuronal Cultures via WNT Signaling Modulation
Stem Cell Reports 2020cited by 78position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Leslie M. Thompson · Massachusetts Institute of Technology6 papers (2013–2023)Christopher Ng · Massachusetts Institute of Technology5 papers (2013–2019)Pamela Milani · Massachusetts Institute of Technology5 papers (2015–2020)David E. Housman · Massachusetts Institute of Technology5 papers (2013–2019) · 5 papers (2017–2023)Amanda J. Kedaigle · Massachusetts Institute of Technology5 papers (2016–2019)Bryan J. Matthews · C4 Therapeutics (United States)5 papers (2013–2017)Adam Labadorf · Boston University5 papers (2012–2013)Jie Wu · Nanchang University4 papers (2017–2023)Yoon Sing Yap · University of Miami4 papers (2013–2017)Anthony R. Soltis · Massachusetts Institute of Technology4 papers (2016–2019)Miriam Adam · Hebrew University of Jerusalem4 papers (2016–2020)Clive N. Svendsen · Cedars-Sinai Medical Center4 papers (2017–2023)Theresa A. Gipson · Massachusetts Institute of Technology4 papers (2013–2019)Simona Dalin · Massachusetts Institute of Technology4 papers (2013–2017) · 4 papers (2017–2020)Nurcan Tunçbağ · Massachusetts Institute of Technology3 papers (2012–2016)Steven Finkbeiner · Gladstone Institutes3 papers (2013–2023)Shao‐shan Carol Huang · New York Genome Center3 papers (2012–2017)Sara J.C. Gosline · Endocrinology Northwest3 papers (2015–2017)