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Andriy Kryshtafovych

University of California, Davis · US
Area of research
Molecular Biology · Materials Chemistry
Research interest
Research interests include Computer science, Computational biology, CASP, Protein structure prediction, Protein structure, and Biology.
h-index
citations
1,847
works
28
NIH funding
primary concept
email

Recent publications

Assessment of Nucleic Acid Structure Prediction in <scp>CASP16</scp>
Proteins Structure Function and Bioinformatics 2025cited by 13position: middledoi
Functional Relevance of <scp>CASP16</scp> Nucleic Acid Predictions as Evaluated by Structure Providers
Proteins Structure Function and Bioinformatics 2025cited by 11position: lastdoi
Functional relevance of CASP16 nucleic acid predictions as evaluated by structure providers
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 10position: lastdoi
Assessment of Pharmaceutical Protein–Ligand Pose and Affinity Predictions in <scp>CASP16</scp>
Proteins Structure Function and Bioinformatics 2025cited by 6position: lastdoi
Assessment of Protein Complex Predictions in <scp>CASP16</scp> : Are We Making Progress?
Proteins Structure Function and Bioinformatics 2025cited by 6position: middledoi
Template-based RNA structure prediction advanced through a blind code competition
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 2position: middledoi
Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge
Nature Methods 2024cited by 17position: middledoi
New prediction categories in <scp>CASP15</scp>
Proteins Structure Function and Bioinformatics 2023cited by 61position: firstdoi
<scp>RNA</scp> target highlights in <scp>CASP15</scp>: Evaluation of predicted models by structure providers
Proteins Structure Function and Bioinformatics 2023cited by 52position: lastdoi
Protein target highlights in <scp>CASP15</scp> : Analysis of models by structure providers
Proteins Structure Function and Bioinformatics 2023cited by 35position: middledoi
<scp>CASP15 cryo‐EM</scp> protein and <scp>RNA</scp> targets: Refinement and analysis using experimental maps
Proteins Structure Function and Bioinformatics 2023cited by 15position: middledoi
New prediction categories in CASP15
2023cited by 4position: firstdoi
RNA target highlights in CASP15: Evaluation of predicted models by structure providers
2023cited by 2position: lastdoi
Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge
Nature Methods 2021cited by 119position: middledoi
Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction (CASP14)
Proteins Structure Function and Bioinformatics 2021cited by 49position: middledoi
Target classification in the 14th <scp>round</scp> of the <scp>critical assessment of protein structure prediction</scp> ( <scp>CASP14</scp> )
Proteins Structure Function and Bioinformatics 2021cited by 43position: middledoi
Target highlights in <scp>CASP14</scp> : Analysis of models by structure providers
Proteins Structure Function and Bioinformatics 2021cited by 39position: middledoi
Assessment of domain interactions in the fourteenth round of the Critical Assessment of Structure Prediction (CASP14)
Proteins Structure Function and Bioinformatics 2021cited by 13position: middledoi
CASP13 target classification into tertiary structure prediction categories
Proteins Structure Function and Bioinformatics 2019cited by 43position: middledoi
Target highlights in CASP13: Experimental target structures through the eyes of their authors
Proteins Structure Function and Bioinformatics 2019cited by 15position: middledoi
Assessment of contact predictions in CASP12: Co‐evolution and deep learning coming of age
Proteins Structure Function and Bioinformatics 2017cited by 201position: middledoi
Assessment of protein assembly prediction in CASP12
Proteins Structure Function and Bioinformatics 2017cited by 77position: middledoi
Definition and classification of evaluation units for tertiary structure prediction in CASP12 facilitated through semi‐automated metrics
Proteins Structure Function and Bioinformatics 2017cited by 16position: middledoi
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
Proteins Structure Function and Bioinformatics 2016cited by 164position: middledoi
CASP 11 target classification
Proteins Structure Function and Bioinformatics 2016cited by 36position: middledoi
Assessment of CASP11 contact‐assisted predictions
Proteins Structure Function and Bioinformatics 2016cited by 28position: middledoi
Evaluation of free modeling targets in CASP11 and ROLL
Proteins Structure Function and Bioinformatics 2015cited by 80position: middledoi
Critical assessment of methods of protein structure prediction (CASP) — round x
Proteins Structure Function and Bioinformatics 2013cited by 690position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Lisa N. Kinch · University of South Alabama8 papers (2015–2021)Rachael C. Kretsch · Stanford University7 papers (2023–2025)Bohdan Monastyrskyy · University of California, Davis7 papers (2015–2019)Rhiju Das · Stanford University7 papers (2023–2025)Nick V. Grishin · The University of Texas Southwestern Medical Center7 papers (2015–2021)John Moult · University of Maryland, College Park5 papers (2013–2023)R. Dustin Schaeffer · Howard Hughes Medical Institute5 papers (2016–2025)Torsten Schwede · SIB Swiss Institute of Bioinformatics4 papers (2013–2023)Maya Topf · Universität Hamburg3 papers (2023–2023)Krzysztof Fidelis · University of California, Davis3 papers (2013–2023)Jérôme Eberhardt · Scripps Institution of Oceanography3 papers (2023–2025)Wenlin Li · Shanghai Medical College of Fudan University3 papers (2015–2016) · 3 papers (2023–2025)Janani Durairaj · SIB Swiss Institute of Bioinformatics3 papers (2023–2025)Wah Chiu · Stanford University2 papers (2023–2023)Gabriel Studer · SIB Swiss Institute of Bioinformatics2 papers (2023–2023) · 2 papers (2023–2023)Ebbe Sloth Andersen · Aarhus University2 papers (2023–2023)Joseph E. Wedekind · University of Rochester Medical Center2 papers (2023–2023)Ivan N. Zheludev · Stanford Medicine2 papers (2023–2023)