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B. Franklin Pugh

Cornell University · US
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Area of research
Molecular Biology
Research interest
Research interests include Genomics and Chromatin Dynamics, RNA Research and Splicing, RNA and protein synthesis mechanisms, and RNA modifications and cancer.
h-index
68
citations
19,830
works
169
NIH funding
primary concept
email

Recent publications

A unified framework for causal gene regulatory network inference grounded in orthogonal molecular evidence
2026cited by 0position: contributordoi
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
eLife 2025cited by 4position: middledoi
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
2025cited by 4position: contributordoi
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
2025cited by 4position: contributordoi
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
eLife 2025cited by 3position: middledoi
Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler
Cell 2024cited by 23position: middledoi
High-Resolution Genome-Wide Maps Reveal Widespread Presence of Torsional Insulation
2024cited by 2position: contributordoi
Joint sequence & chromatin neural networks characterize the differential abilities of Forkhead transcription factors to engage inaccessible chromatin
2023cited by 10position: contributordoi
GenoPipe: identifying the genotype of origin within (epi)genomic datasets.
2023cited by 2position: contributordoi
GenoPipe: identifying the genotype of origin within (epi)genomic datasets
2023cited by 0position: contributordoi
A chromatin-associated regulator of RNA Polymerase III assembly at tRNA genes revealed by locus-specific proteomics
2023cited by 0position: contributordoi
An integrated SAGA and TFIID PIC assembly pathway selective for poised and induced promoters.
2022cited by 12position: contributordoi
Genome-wide promoter assembly in <i>E. coli</i> measured at single-base resolution.
2022cited by 8position: contributordoi
PEGR: a flexible management platform for reproducible epigenomic and genomic research.
2022cited by 7position: contributordoi
STENCIL: A web templating engine for visualizing and sharing life science datasets.
2022cited by 2position: contributordoi
A high-resolution protein architecture of the budding yeast genome
Nature 2021cited by 275position: lastdoi
A high-resolution protein architecture of the budding yeast genome.
2021cited by 216position: contributordoi
What do Transcription Factors Interact With?
Journal of Molecular Biology 2021cited by 64position: lastdoi
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
2021cited by 25position: contributordoi
Acute stress drives global repression through two independent RNA polymerase II stalling events in Saccharomyces.
2021cited by 20position: contributordoi
Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in <i>Saccharomyces cerevisiae</i>.
2021cited by 12position: contributordoi
High similarity among ChEC-seq datasets
2021cited by 4position: contributordoi
Ssl2/TFIIH function in Transcription Start Site Scanning by RNA Polymerase II in <i>Saccharomyces cerevisiae</i>
2021cited by 1position: contributordoi
Protein architecture of the yeast genome.
2021cited by 0position: contributordoi
PEGR: a flexible management platform for reproducible epigenomic and genomic research
2021cited by 0position: contributordoi
STENCIL: A web templating engine for visualizing and sharing life science datasets
2021cited by 0position: contributordoi
Author response: Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae
2021cited by 0position: contributordoi
Universal promoter scanning by Pol II during transcription initiation in Saccharomyces cerevisiae
Genome biology 2020cited by 48position: middledoi
A ChIP-exo screen of 887 PCRP transcription factor antibodies in human cells
2020cited by 3position: contributordoi
Kinetic Competition between Elongation Rate and Binding of NELF Controls Promoter-Proximal Pausing
Molecular Cell 2013cited by 127position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

· 23 papers (2020–2026) · 12 papers (2021–2026)Michelle D. Wang · Howard Hughes Medical Institute5 papers (2024–2025)Marcus B. Smolka · Cornell University5 papers (2024–2025)Shrabani Basu · University of Pittsburgh3 papers (2021–2021)Porter M. Hall · Cornell University3 papers (2024–2025)Bryce E. Nickels · Rutgers, The State University of New Jersey3 papers (2021–2021)Lauren A Mayse · SpringerNature3 papers (2024–2025) · 3 papers (2024–2025) · 3 papers (2024–2025)Shaun Mahony · Pennsylvania State University3 papers (2021–2023)Craig D Kaplan · University of Pittsburgh3 papers (2021–2021) · 3 papers (2021–2022) · 2 papers (2025–2025)William Lai · Cornell University2 papers (2020–2021)Lauren A. Mayse · Howard Hughes Medical Institute2 papers (2025–2025)Porter M. Hall · Howard Hughes Medical Institute2 papers (2025–2025)Nitika Badjatia · Pennsylvania State University1 papers (2021–2021)Gretta D. Kellogg · Pennsylvania State University1 papers (2021–2021)Ho Sung Rhee · Pennsylvania State University1 papers (2013–2013)
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