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Antonis Rokas

Dartmouth College · US
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Area of research
Molecular Biology · Cell Biology
Research interest
Research interests include Biology, Evolutionary biology, Phylogenetic tree, Genome, Gene, and Phylogenetics.
h-index
citations
7,722
works
79
NIH funding
primary concept
email

Recent publications

Ancient co-option of LTR retrotransposons as yeast centromeres
Nature 2026cited by 2position: middledoi
The role of metabolism in shaping enzyme structures over 400 million years
Nature 2025cited by 19position: middledoi
Convergent expansions of keystone gene families drive metabolic innovation in Saccharomycotina yeasts
Proceedings of the National Academy of Sciences 2025cited by 13position: lastdoi
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage
Molecular Systems Biology 2025cited by 6position: middledoi
Aspergillus fumigatus mitogenomes and their influence on azole-resistant and -susceptible populations
npj Antimicrobials and Resistance 2025cited by 3position: middledoi
Ancient co-option of LTR retrotransposons as yeast centromeres
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 3position: middledoi
Machine learning identifies novel signatures of antifungal drug resistance in <i>Saccharomycotina</i> yeasts
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 3position: lastdoi
Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species
Molecular Biology and Evolution 2025cited by 2position: lastdoi
Stable hypermutators revealed by the genomic landscape of DNA repair genes among yeast species
bioRxiv (Cold Spring Harbor Laboratory) 2025cited by 1position: lastdoi
Genomic factors shape carbon and nitrogen metabolic niche breadth across Saccharomycotina yeasts
Science 2024cited by 120position: middledoi
Phylogenomics reveals extensive misidentification of fungal strains from the genus <i>Aspergillus</i>
Microbiology Spectrum 2024cited by 32position: lastdoi
Machine learning enables identification of an alternative yeast galactose utilization pathway
Proceedings of the National Academy of Sciences 2024cited by 26position: lastdoi
A taxon-rich and genome-scale phylogeny of Opisthokonta
PLoS Biology 2024cited by 25position: middledoi
Aspergillus fumigatus conidial surface-associated proteome reveals factors for fungal evasion and host immunity modulation
Nature Microbiology 2024cited by 22position: middledoi
Diverse signatures of convergent evolution in cactus-associated yeasts
PLoS Biology 2024cited by 14position: lastdoi
Exploring Saccharomycotina Yeast Ecology Through an Ecological Ontology Framework
Yeast 2024cited by 14position: middledoi
The Influence of the Number of Tree Searches on Maximum Likelihood Inference in Phylogenomics
Systematic Biology 2024cited by 13position: middledoi
PhyKIT: A Multitool for Phylogenomics
Current Protocols 2024cited by 12position: middledoi
Saccharomycotina yeasts defy long-standing macroecological patterns
Proceedings of the National Academy of Sciences 2024cited by 12position: lastdoi
Evolutionary origin and population diversity of a cryptic hybrid pathogen
Nature Communications 2024cited by 8position: lastdoi
Specialization Restricts the Evolutionary Paths Available to Yeast Sugar Transporters
Molecular Biology and Evolution 2024cited by 8position: middledoi
Unique trajectory of gene family evolution from genomic analysis of nearly all known species in an ancient yeast lineage
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 7position: middledoi
Genomic factors shaping codon usage across the Saccharomycotina subphylum
G3 Genes Genomes Genetics 2024cited by 6position: middledoi
Genome-wide patterns of noncoding and protein-coding sequence variation in the major fungal pathogen <i>Aspergillus fumigatus</i>
G3 Genes Genomes Genetics 2024cited by 3position: lastdoi
Functional and Evolutionary Integration of a Fungal Gene With a Bacterial Operon
Molecular Biology and Evolution 2024cited by 3position: middledoi
The evolution of the gliotoxin biosynthetic gene cluster in <i>Penicillium</i> fungi
G3 Genes Genomes Genetics 2024cited by 2position: lastdoi
Convergent expansions of keystone gene families drive metabolic innovation in a major eukaryotic clade
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 1position: lastdoi
Gestation length drives brain size and litter size variation in eutherian mammals
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 0position: lastdoi
Incongruence in the phylogenomics era
Nature Reviews Genetics 2023cited by 230position: lastdoi
A genome-informed higher rank classification of the biotechnologically important fungal subphylum <i> Saccharomycotina</i>
Studies in Mycology 2023cited by 118position: lastdoi

Grants

No grants ingested yet.

Frequent collaborators

Xiaofan Zhou · Pennsylvania State University40 papers (2012–2025)Xing‐Xing Shen · Research Institute of Resource Insects39 papers (2017–2025)Chris Todd Hittinger · University of Wisconsin–Madison35 papers (2017–2026)Jacob L. Steenwyk · University of California, Berkeley31 papers (2019–2025) · 26 papers (2019–2025)Dana A. Opulente · University of Wisconsin–Madison26 papers (2018–2025)Marizeth Groenewald · University of Tennessee at Knoxville22 papers (2019–2025) · 17 papers (2023–2025) · 16 papers (2022–2025)Yuanning Li · Shandong University14 papers (2020–2024)Kyle T. David · Vanderbilt University10 papers (2020–2025)Jacek Kominek · Great Lakes Bioenergy Research Center9 papers (2018–2020) · 9 papers (2018–2025)Gustavo H. Goldman · Technical University of Munich9 papers (2020–2025)Cletus P. Kurtzman · University of Tennessee at Knoxville7 papers (2018–2020)Nicholas H. Oberlies · University of Illinois Chicago6 papers (2020–2024)Huzefa A. Raja · University of North Carolina at Greensboro6 papers (2020–2024)Amanda Beth Hulfachor · Great Lakes Bioenergy Research Center5 papers (2019–2020)Matthew E. Mead · University of California, Riverside5 papers (2020–2023) · 5 papers (2019–2020)
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