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Thomas B.K. Watkins

Stratford University · US
Area of research
Cancer Research · Molecular Biology
Research interest
Research interests include Cancer Genomics and Diagnostics, RNA modifications and cancer, Lung Cancer Treatments and Mutations, and Epigenetics and DNA Methylation.
h-index
37
citations
19,484
works
117
NIH funding
primary concept
Biology
email

Recent publications

Clonal driver neoantigen loss under EGFR TKI and immune selection pressures
Nature 2025cited by 23position: middledoi
Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA
Nature 2023cited by 327position: middledoi
The evolution of lung cancer and impact of subclonal selection in TRACERx
Nature 2023cited by 300position: middledoi
RETRACTED ARTICLE: Antibodies against endogenous retroviruses promote lung cancer immunotherapy
Nature 2023cited by 247position: middledoi
The evolution of non-small cell lung cancer metastases in TRACERx
Nature 2023cited by 230position: middledoi
Body composition and lung cancer-associated cachexia in TRACERx
Nature Medicine 2023cited by 123position: middledoi
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity
PLoS Computational Biology 2023cited by 20position: firstdoi
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
Genome biology 2022cited by 139position: middledoi
Clonal somatic copy number altered driver events inform drug sensitivity in high-grade serous ovarian cancer
Nature Communications 2022cited by 41position: middledoi
MEDICC2: whole-genome doubling aware copy-number phylogenies for cancer evolution
Kölner Universitäts PublikationsServer (Universität zu Köln) 2022cited by 24position: middledoi
Refphase: Multi-sample reference phasing reveals haplotype-specific copy number heterogeneity
bioRxiv (Cold Spring Harbor Laboratory) 2022cited by 1position: firstdoi
Meta-analysis of tumor- and T cell-intrinsic mechanisms of sensitization to checkpoint inhibition
Cell 2021cited by 875position: middledoi
Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Cell 2021cited by 550position: middledoi
Induction of APOBEC3 Exacerbates DNA Replication Stress and Chromosomal Instability in Early Breast and Lung Cancer Evolution
Cancer Discovery 2021cited by 142position: middledoi
Pervasive chromosomal instability and karyotype order in tumour evolution
Nature 2020cited by 401position: firstdoi
Interplay between whole-genome doubling and the accumulation of deleterious alterations in cancer evolution
Nature Genetics 2020cited by 275position: middledoi
The National Lung Matrix Trial of personalized therapy in lung cancer
Nature 2020cited by 138position: middledoi
A clonal expression biomarker associates with lung cancer mortality
Nature Medicine 2019cited by 135position: middledoi
Chromosomal instability drives metastasis through a cytosolic DNA response
Nature 2018cited by 1,531position: middledoi
Deterministic Evolutionary Trajectories Influence Primary Tumor Growth: TRACERx Renal
Cell 2018cited by 664position: middledoi
Tracking the Evolution of Non–Small-Cell Lung Cancer
New England Journal of Medicine 2017cited by 2,410position: middledoi
Allele-Specific HLA Loss and Immune Escape in Lung Cancer Evolution
Cell 2017cited by 1,311position: middledoi
Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers
Nature Genetics 2017cited by 577position: middledoi
Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
Science 2016cited by 3,084position: middledoi
Relapsed neuroblastomas show frequent RAS-MAPK pathway mutations
Nature Genetics 2015cited by 552position: middledoi
Calcineurin Signaling Mediates Activity-Dependent Relocation of the Axon Initial Segment
Journal of Neuroscience 2013cited by 130position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Peter Van Loo · The University of Texas MD Anderson Cancer Center5 papers (2020–2023)Kerstin Haase · German Cancer Society5 papers (2020–2023)Charles Swanton · Cancer Evolution and Genome Instability Laboratory5 papers (2020–2023)Roland F. Schwarz · University of Cologne4 papers (2022–2023) · 4 papers (2022–2023)Tom L. Kaufmann · Max Delbrück Center4 papers (2022–2023)Nicholas McGranahan · London Cancer3 papers (2020–2023)Emilia L. Lim · University College London3 papers (2020–2023)Marina Petković · Max Delbrück Center2 papers (2022–2022)Darlan Conterno Minussi · Houston Methodist2 papers (2022–2022)Matthew R. Huska · Max Delbrück Center2 papers (2022–2023)Nicholas E. Navin · The University of Texas MD Anderson Cancer Center2 papers (2022–2022) · 2 papers (2022–2022)Sofya Laskina · Freie Universität Berlin2 papers (2022–2022)Maxime Tarabichi · Université Libre de Bruxelles2 papers (2022–2022)Mariam Jamal‐Hanjani · CRUK Lung Cancer Centre of Excellence1 papers (2020–2020)Andrew Rowan · The Francis Crick Institute1 papers (2020–2020)Cody B. Duncan · Australian Regenerative Medicine Institute1 papers (2023–2023)Sabrina Lebron · King's College London1 papers (2013–2013)Adna S. Dumitrescu · Healthcare Improvement Scotland1 papers (2013–2013)