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John E. Stone

University of Illinois Urbana-Champaign · US
Area of research
Molecular Biology · Hardware and Architecture
Research interest
Research interests include Computer science, Molecular dynamics, Nanotechnology, Computational biology, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), and Coronavirus disease 2019 (COVID-19).
h-index
citations
4,008
works
8
NIH funding
primary concept
email

Recent publications

BPS2025 - Enhancing molecular visualization, dynamics, and structural analysis tools for biomolecular studies
Biophysical Journal 2025cited by 0position: middledoi
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations
Journal of Chemical Information and Modeling 2023cited by 89position: middledoi
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
The International Journal of High Performance Computing Applications 2022cited by 95position: middledoi
AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics
The International Journal of High Performance Computing Applications 2021cited by 183position: middledoi
Scalable molecular dynamics on CPU and GPU architectures with NAMD
The Journal of Chemical Physics 2020cited by 3,206position: middledoi
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism
Cell 2019cited by 189position: middledoi
Molecular dynamics-based refinement and validation for sub-5 Å cryo-electron microscopy maps
eLife 2016cited by 168position: middledoi
Stable Small Quantum Dots for Synaptic Receptor Tracking on Live Neurons
Angewandte Chemie International Edition 2014cited by 78position: middledoi
Stable Small Quantum Dots for Synaptic Receptor Tracking on Live Neurons
Angewandte Chemie 2014cited by 12position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Emad Tajkhorshid · University of Illinois Urbana-Champaign4 papers (2019–2025)Klaus Schulten · University of California, Berkeley4 papers (2014–2020)Abhishek Singharoy · University of Illinois Urbana-Champaign3 papers (2016–2020)Rafael C. Bernardi · Auburn University3 papers (2020–2025)Ivan Teo · University of Illinois Urbana-Champaign2 papers (2016–2019)Ryan McGreevy · University of Illinois Urbana-Champaign2 papers (2016–2020)William N. Green · University of Chicago2 papers (2014–2014)J. C. Phillips · University of Illinois Urbana-Champaign2 papers (2019–2020)Michelle A. Baird · University of California, Berkeley2 papers (2014–2014)Okunola Jeyifous · University of Chicago2 papers (2014–2014)Aleksei Aksimentiev · University of Illinois Urbana-Champaign2 papers (2019–2020)Christophe Chipot · Centre National de la Recherche Scientifique2 papers (2019–2020)En Cai · Carnegie Mellon University2 papers (2014–2014)Pinghua Ge · University of Illinois Urbana-Champaign2 papers (2014–2014)Yong Wang · University of Illinois Urbana-Champaign2 papers (2014–2014)João V. Ribeiro · University of Illinois Urbana-Champaign2 papers (2020–2023)Andrew M. Smith · University of Illinois Urbana-Champaign2 papers (2014–2014)Yanxin Liu · Advanced Bioscience Laboratories (United States)2 papers (2014–2014) · 2 papers (2014–2014)Zaida Luthey‐Schulten · U.S. National Science Foundation2 papers (2019–2020)