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Sara Kochanny

University of Chicago · US
🔎 Find collaborators in Artificial Intelligence · Radiology, Nuclear Medicine and Imaging →
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Area of research
Artificial Intelligence · Radiology, Nuclear Medicine and Imaging
Research interest
Research interests include AI in cancer detection, Radiomics and Machine Learning in Medical Imaging, Head and Neck Cancer Studies, and Cancer Genomics and Diagnostics.
h-index
21
citations
2,542
works
78
NIH funding
primary concept
email

Recent publications

Analysis of AI foundation model features decodes the histopathologic landscape of HPV-positive head and neck squamous cell carcinomas
Oral Oncology 2025cited by 9position: middledoi
Abstract 2471: Interpretable HPV detection in head and neck cancer using foundation models and synthetic digital pathology
Cancer Research 2025cited by 0position: middledoi
Corrigendum to “Analysis of AI foundation model features decodes the histopathologic landscape of HPV-positive head and neck squamous cell carcinomas”. [Oral Oncol. 163 (2025) 107207]
Oral Oncology 2025cited by 0position: middledoi
Slideflow: deep learning for digital histopathology with real-time whole-slide visualization
BMC Bioinformatics 2024cited by 64position: middledoi
Generative adversarial networks accurately reconstruct pan-cancer histology from pathologic, genomic, and radiographic latent features
Science Advances 2024cited by 20position: middledoi
Artificial intelligence-based morphologic classification and molecular characterization of neuroblastic tumors from digital histopathology
npj Precision Oncology 2024cited by 14position: middledoi
Acquired resistance to immunotherapy and chemoradiation in MYC amplified head and neck cancer
npj Precision Oncology 2024cited by 14position: middledoi
Developing a low-cost, open-source, locally manufactured workstation and computational pipeline for automated histopathology evaluation using deep learning
EBioMedicine 2024cited by 12position: middledoi
Artificial intelligence-based epigenomic, transcriptomic and histologic signatures of tobacco use in oral squamous cell carcinoma
npj Precision Oncology 2024cited by 12position: middledoi
Switching anti-EGFR antibody re-sensitizes head and neck cancer patient following acquired resistance to cetuximab
Cancer Gene Therapy 2024cited by 6position: middledoi
Deep learning generates synthetic cancer histology for explainability and education
npj Precision Oncology 2023cited by 69position: middledoi
Integration of clinical features and deep learning on pathology for the prediction of breast cancer recurrence assays and risk of recurrence
npj Breast Cancer 2023cited by 59position: middledoi
Machine learning for the prediction of toxicities from head and neck cancer treatment: A systematic review with meta-analysis
Oral Oncology 2023cited by 31position: middledoi
Validating a low-cost, open-source, locally manufactured workstation and computational pipeline for automated histopathology evaluation using deep learning
bioRxiv (Cold Spring Harbor Laboratory) 2023cited by 1position: middledoi
Uncertainty-informed deep learning models enable high-confidence predictions for digital histopathology
Nature Communications 2022cited by 119position: middledoi
The impact of site-specific digital histology signatures on deep learning model accuracy and bias
Nature Communications 2021cited by 273position: middledoi
Immune‐related adverse events are associated with improved response, progression‐free survival, and overall survival for patients with head and neck cancer receiving immune checkpoint inhibitors
Cancer 2021cited by 80position: middledoi
Nivolumab, nabpaclitaxel, and carboplatin followed by risk/response adaptive de-escalated locoregional therapy for HPV-associated oropharyngeal cancer: OPTIMA II trial.
Journal of Clinical Oncology 2021cited by 30position: middledoi
Risk and response adapted de-intensified treatment for HPV-associated oropharyngeal cancer: Optima paradigm expanded experience
Oral Oncology 2021cited by 30position: middledoi
Pan-cancer image-based detection of clinically actionable genetic alterations
Nature Cancer 2020cited by 622position: middledoi
Machine Learning–Guided Adjuvant Treatment of Head and Neck Cancer
JAMA Network Open 2020cited by 146position: middledoi
A randomized phase 2 network trial of tivantinib plus cetuximab versus cetuximab in patients with recurrent/metastatic head and neck squamous cell carcinoma
Cancer 2020cited by 37position: firstdoi
The Aachen Protocol for Deep Learning Histopathology: A hands-on guide for data preprocessing
Zenodo (CERN European Organization for Nuclear Research) 2020cited by 29position: middledoi
A randomized phase 2 study of temsirolimus and cetuximab versus temsirolimus alone in recurrent/metastatic, cetuximab‐resistant head and neck cancer: The MAESTRO study
Cancer 2020cited by 20position: middledoi
Machine learning guided adjuvant treatment of head and neck cancer.
Journal of Clinical Oncology 2020cited by 17position: middledoi
Author Correction: Pan-cancer image-based detection of clinically actionable genetic alterations
Nature Cancer 2020cited by 7position: middledoi
Deep learning detects virus presence in cancer histology
bioRxiv (Cold Spring Harbor Laboratory) 2019cited by 36position: middledoi
A pilot study of the pan‐class I PI3K inhibitor buparlisib in combination with cetuximab in patients with recurrent or metastatic head and neck cancer
Head & Neck 2019cited by 27position: middledoi
OPTIMA: a phase II dose and volume de-escalation trial for human papillomavirus-positive oropharyngeal cancer
Annals of Oncology 2018cited by 230position: middledoi
Association of immune-related adverse events (irAEs) with improved response, progression-free survival, and overall survival for patients with metastatic head and neck cancer receiving anti-PD-1 therapy.
Journal of Clinical Oncology 2018cited by 30position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Alexander T. Pearson · RWTH Aachen University21 papers (2018–2025)James M. Dolezal · Geisinger Medical Center13 papers (2019–2025)Frederick M. Howard · University of Chicago12 papers (2020–2025)Everett E. Vokes · University of Illinois Chicago11 papers (2018–2025)Jefree J. Schulte · University of Wisconsin–Madison9 papers (2019–2025)Nishant Agrawal · Institute of Chartered Financial Analysts of India8 papers (2018–2025)Emma Dyer · University of Chicago8 papers (2023–2025)Nicole A. Cipriani · University of Chicago8 papers (2019–2025)Tanguy Y. Seiwert · University Hospital and Clinics8 papers (2018–2021)Mark W. Lingen · University of Chicago7 papers (2018–2025)Ari J. Rosenberg · University of Chicago6 papers (2021–2025)Siddhi Ramesh · University of Chicago6 papers (2022–2024)Elizabeth A. Blair · Elgin Community College6 papers (2018–2025)Aditya Juloori · University of Chicago6 papers (2021–2025)Evgeny Izumchenko · University of Chicago6 papers (2021–2025)Ryan J. Brisson · University of Florida6 papers (2018–2021)Jakob Nikolas Kather · Ludwig-Maximilians-Universität München5 papers (2019–2024)Andrew Srisuwananukorn · The Ohio State University5 papers (2019–2024)Jeffrey Chin · University of California, San Francisco5 papers (2021–2025)Hanna M. Hieromnimon · University of Chicago5 papers (2023–2025)
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