Area of research
Genetics · Molecular Biology
Research interest
Research interests include Genomics and Phylogenetic Studies, Evolution and Genetic Dynamics, Genetic Associations and Epidemiology, and RNA and protein synthesis mechanisms.
Separating selection from mutation in antibody language models
A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer–Encoder
Predicting functional constraints across evolutionary timescales with phylogeny-informed genomic language models
Nucleotide context models outperform protein language models for predicting antibody affinity maturation
Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19
Assessing predictions on fitness effects of missense variants in HMBS in CAGI6
Whole-genome sequencing reveals a complex African population demographic history and signatures of local adaptation
Functional genomics of OCTN2 variants informs protein-specific variant effect predictor for Carnitine Transporter Deficiency
Type I interferon autoantibodies are associated with systemic immune alterations in patients with COVID-19
XYZeq: Spatially resolved single-cell RNA sequencing reveals expression heterogeneity in the tumor microenvironment
SCITO-seq: single-cell combinatorial indexed cytometry sequencing
Inference of complex population histories using whole-genome sequences from multiple populations
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
Loci associated with skin pigmentation identified in African populations
Time-Resolved Proteomics Extends Ribosome Profiling-Based Measurements of Protein Synthesis Dynamics
The Simons Genome Diversity Project: 300 genomes from 142 diverse populations
Robust and scalable inference of population history from hundreds of unphased whole genomes
Genomic evidence for the Pleistocene and recent population history of Native Americans
Genetic and socioeconomic study of mate choice in Latinos reveals novel assortment patterns
Distortion of genealogical properties when the sample is very large
The Influence of Relatives on the Efficiency and Error Rate of Familial Searching
Genomic Variation in Natural Populations of<i>Drosophila melanogaster</i>
BioMADE: Development of genomic language models to predict optimal genomes for commercial protein production
CAREER: Advancing Physical Human-Robot Interaction through Intuitive Sensorimotor Communication
EAGER: Human Arm Impedance Modulation During Overground Physical Interactions
CAREER: Computational Methods for High-Throughput Sequencing and Population Genomics Analysis