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Paul J. McMurdie

Mountain View Clinical Research ·
Area of research
Molecular Biology · Ecology
Research interest
Research interests include Gut microbiota and health, Genomics and Phylogenetic Studies, Microbial Community Ecology and Physiology, and Probiotics and Fermented Foods.
h-index
24
citations
70,435
works
36
NIH funding
primary concept
email

Recent publications

Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease
Nature Communications 2020cited by 281position: middledoi
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
The ISME Journal 2017cited by 3,388position: middledoi
Leveraging sequence-based faecal microbial community survey data to identify a composite biomarker for colorectal cancer
Gut 2017cited by 184position: middledoi
DADA2: High-resolution sample inference from Illumina amplicon data
Nature Methods 2016cited by 35,617position: middledoi
Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses
F1000Research 2016cited by 993position: middledoi
Temporal and spatial variation of the human microbiota during pregnancy
Proceedings of the National Academy of Sciences 2015cited by 1,199position: middledoi
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
PLoS Computational Biology 2014cited by 3,059position: firstdoi
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
PLoS ONE 2013cited by 22,193position: firstdoi
Advancing Our Understanding of the Human Microbiome Using QIIME
Methods in enzymology on CD-ROM/Methods in enzymology 2013cited by 624position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Susan Holmes · Stanford University7 papers (2013–2017)Benjamin J. Callahan · North Carolina State University3 papers (2015–2017)Donna Berg-Lyons · University of Colorado Boulder1 papers (2013–2013)Michael Rosen · Northwestern University1 papers (2016–2016)David A. Relman · Stanford University1 papers (2015–2015)Emily B. Hollister · Diversitech (United States)1 papers (2017–2017)Julia Cope · Diversitech (United States)1 papers (2017–2017)Daniel B. DiGiulio · Stanford University1 papers (2015–2015)Ronald J. Wong · Statens Serum Institut1 papers (2015–2015)Juan Manuel Peralta‐Sánchez · University of Colorado Boulder1 papers (2013–2013)Anna Robaczewska · Stanford University1 papers (2015–2015)Elizabeth K. Costello · Stanford University1 papers (2015–2015)Adam Altrichter · Virginia Tech1 papers (2017–2017)Zhenjiang Zech Xu · Southern Medical University Shenzhen Hospital1 papers (2013–2013)Gail Ackermann · University of California, San Francisco1 papers (2013–2013)Kris Sankaran · University of Wisconsin–Madison1 papers (2016–2016)José‐Miguel Yamal · University of Texas Health Science Center at Dallas1 papers (2017–2017)James S. Huntley · University of Colorado Boulder1 papers (2013–2013)Christian L. Lauber · The Ohio State University Wexner Medical Center1 papers (2013–2013)Antonio González · Universidad de Sevilla1 papers (2013–2013)