Area of research
Infectious Diseases · Virology
Research interest
Research interests include SARS-CoV-2 and COVID-19 Research, HIV Research and Treatment, HIV/AIDS Research and Interventions, and COVID-19 Clinical Research Studies.
Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study.
Bioinformatic identification of lentivirus transfer plasmid contamination causing false-positive HIV NAT results in a high-throughput molecular screening laboratory.
Genomic Surveillance Reveals Emergence and Spread of Macrolide-Resistant Mycoplasma pneumoniae in Australia During the 2023-2024 Epidemic.
Dynamics and ecology of a multistage expansion of Oropouche virus in Brazil
Identification and Masking of Artefactual and Misleading Within-Host Variants in Deep-Sequencing SARS-CoV-2 Data
DAMPA - accelerated and simplified design of probe panels for targeted metagenomics using pangenome graphs
Culture-independent identification and serotyping of
<i>Streptococcus pneumoniae</i>
by targeted metagenomics in pleural fluid samples
HIV Transmission in a Declining African Epidemic
Identifying genomic surveillance gaps in Africa for the global public health response to West Nile virus: a systematic review.
Respiratory virus genomic epidemiology during post-pandemic re-emergence of influenza in Australia
Next-Generation Sequencing Methods for Sensitive Hepatitis B Viral Genome Analysis: A European Study
Low level of viral intra-host diversity is associated with severe SFTS disease
Nanopore-based hybridization capture approaches for targeted viral metagenomics and whole-genome sequencing
The genetic architecture of HIV-1 virulence.
Prevalence of persistent SARS-CoV-2 in a large community surveillance study
Prevalence of persistent SARS-CoV-2 in a large community surveillance study.
Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses
Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus
Targeted metagenomics reveals association between severity and pathogen co-detection in infants with respiratory syncytial virus.
Longitudinal population-level HIV epidemiologic and genomic surveillance highlights growing gender disparity of HIV transmission in Uganda.
Demographics of sources of HIV-1 transmission in Zambia: a molecular epidemiology analysis in the HPTN 071 PopART study.
Blood donation screening for hepatitis B virus core antibodies: The importance of confirmatory testing and initial implication for rare blood donor groups
Improving the representativeness of UK's national COVID-19 Infection Survey through spatio-temporal regression and post-stratification.
Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity
Blood donation screening for hepatitis B virus core antibodies: The importance of confirmatory testing and initial implication for rare blood donor groups.
Biased estimates of phylogenetic branch lengths resulting from the discretised Gamma model of site rate heterogeneity
Castanet: a pipeline for rapid analysis of targeted multi-pathogen genomic data.
Evaluating metagenomics and targeted approaches for diagnosis and surveillance of viruses
Targeted Culture-Independent Sequencing Identifies Emergence of Macrolide-Resistant<i>Bordetella Pertussis</i>in Australia
Reconstruction of the historic time course of blood-borne virus contamination of clotting factor concentrates, 1974-1992.