Area of research
Molecular Biology · Information Systems and Management
Research interest
Research interests include Gene Regulatory Network Analysis, Microbial Metabolic Engineering and Bioproduction, Bioinformatics and Genomic Networks, and Scientific Computing and Data Management.
libRoadRunner 2.0: a high performance SBML simulation and analysis library
Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression
SBML Level 3: an extensible format for the exchange and reuse of biological models
Distinct Classes of Complex Structural Variation Uncovered across Thousands of Cancer Genome Graphs
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2
Tellurium: An extensible python-based modeling environment for systems and synthetic biology
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core
Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3)
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)