Area of research
Molecular Biology · Genetics
Research interest
Research interests include Microbial Metabolic Engineering and Bioproduction, Gene Regulatory Network Analysis, Bioinformatics and Genomic Networks, and Bacterial Genetics and Biotechnology.
Extracellular respiration is a latent energy metabolism in Escherichia coli
iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia
Deciphering nutritional stress responses via knowledge-enriched transcriptomics for microbial engineering
A multi-scale expression and regulation knowledge base for<i>Escherichia coli</i>
MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
Recon3D enables a three-dimensional view of gene variation in human metabolism
Machine learning applied to enzyme turnover numbers reveals protein structural correlates and improves metabolic models
A Systematic Evaluation of Methods for Tailoring Genome-Scale Metabolic Models
Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism
Recon 2.2: from reconstruction to model of human metabolism
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism
Genome-Scale Metabolic Model for the Green Alga <i>Chlorella vulgaris</i> UTEX 395 Accurately Predicts Phenotypes under Autotrophic, Heterotrophic, and Mixotrophic Growth Conditions
Personalized Whole-Cell Kinetic Models of Metabolism for Discovery in Genomics and Pharmacodynamics
A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks