Area of research
Molecular Biology · Genetics
Research interest
Research interests include Genomics and Phylogenetic Studies, RNA and protein synthesis mechanisms, Genetic diversity and population structure, and Protein Structure and Dynamics.
Effectidor II: a pan-genomic AI-based algorithm for the prediction of type III secretion system effectors
M1CR0B1AL1Z3R 2.0: an enhanced web server for comparative analysis of bacterial genomes at scale
Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus <i>Xanthomonas</i>
Evolutionary Insights from the Mitochondrial Genome of <i>Oikopleura dioica</i> : Sequencing Challenges, RNA Editing, Gene Transfers to the Nucleus, and tRNA Loss
Genetic and functional diversity help explain pathogenic, weakly pathogenic, and commensal lifestyles in the genus <i>Xanthomonas</i>
Phylogenetic Distribution and Evolution of Type VI Secretion System in the Genus Xanthomonas
Natural language processing approach to model the secretion signal of type III effectors
Machine-learning of complex evolutionary signals improves classification of SNVs
Show me your secret(ed) weapons: a multifaceted approach reveals a wide arsenal of type III‐secreted effectors in the cucurbit pathogenic bacterium <i>Acidovorax citrulli</i> and novel effectors in the <i>Acidovorax</i> genus
Independent Evolution of Strychnine Recognition by Bitter Taste Receptor Subtypes
Evolution of the U.S. Biological Select Agent Rathayibacter toxicus
Corrigendum: Independent Evolution of Strychnine Recognition by Bitter Taste Receptor Subtypes
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules
Genomic analysis of 38 Legionella species identifies large and diverse effector repertoires
Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations
Insights from the Genome Sequence of Acidovorax citrulli M6, a Group I Strain of the Causal Agent of Bacterial Fruit Blotch of Cucurbits
GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters
Transfer of noncoding DNA drives regulatory rewiring in bacteria
Identification of Novel Coxiella burnetii Icm/Dot Effectors and Genetic Analysis of Their Involvement in Modulating a Mitogen-Activated Protein Kinase Pathway
Computational modeling and experimental validation of the <i>Legionella</i> and <i>Coxiella</i> virulence-related type-IVB secretion signal
FastML: a web server for probabilistic reconstruction of ancestral sequences
The interface of protein structure, protein biophysics, and molecular evolution