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Shuangge Ma

Yale University · US
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Area of research
Molecular Biology · Statistics and Probability
Research interest
Research interests include Gene expression and cancer classification, Statistical Methods and Inference, Bioinformatics and Genomic Networks, and Statistical Methods and Bayesian Inference.
h-index
52
citations
14,371
works
507
NIH funding
primary concept
Medicine
email

Recent publications

Integrating Omics and Pathological Imaging Data for Cancer Prognosis via a Deep Neural Network-Based Cox Model.
2026cited by 0position: contributordoi
DNN-based semiparametric AFT model for integrating genomic and pathological imaging data in cancer prognosis.
2026cited by 0position: contributordoi
Robust Heterogeneity Adjustment for Gaussian Graphical Model With Latent Variables.
2026cited by 0position: contributordoi
Bayesian Modeling of Cancer Outcomes Using Genetic Variables Assisted by Pathological Imaging Data.
2025cited by 1position: contributordoi
Hierarchical Multi-Label Classification With Gene-Environment Interactions in Disease Modeling.
2025cited by 1position: contributordoi
Ordinal Sparse Neural Networks for Modeling Gene- and Imaging-Environment Interactions.
2025cited by 0position: contributordoi
Analysis of cross-platform health communication with a network approach.
2025cited by 0position: contributordoi
Incorporating prior information in gene expression network-based cancer heterogeneity analysis.
2025cited by 0position: contributordoi
Robust Transfer Learning for High-Dimensional GLM Using $$ \gamma $$ -Divergence With Applications to Cancer Genomics.
2025cited by 0position: contributordoi
Subgroup Testing in the Change-Plane Cox Model.
2025cited by 0position: contributordoi
GE-IA-NAM: gene-environment interaction analysis via imaging-assisted neural additive model.
2025cited by 0position: contributordoi
Robust sparse Bayesian regression for longitudinal gene-environment interactions.
2025cited by 0position: contributordoi
Joint modeling of mixed outcomes using a rank-based sparse neural network
Journal of Biomedical Informatics 2025cited by 0position: contributordoi
HEARTSVG: a fast and accurate method for identifying spatially variable genes in large-scale spatial transcriptomics.
2024cited by 19position: contributordoi
The spike-and-slab quantile LASSO for robust variable selection in cancer genomics studies.
2024cited by 2position: contributordoi
Editorial.
2024cited by 0position: contributordoi
Information-incorporated sparse hierarchical cancer heterogeneity analysis.
2024cited by 0position: contributordoi
SARS-CoV-2 mRNA vaccines decouple anti-viral immunity from humoral autoimmunity
Nature Communications 2023cited by 45position: middledoi
Robust Bayesian variable selection for gene-environment interactions.
2023cited by 15position: contributordoi
Gene-environment interaction analysis via deep learning.
2023cited by 9position: contributordoi
Prior information-assisted integrative analysis of multiple datasets.
2023cited by 6position: contributordoi
Pathological imaging-assisted cancer gene-environment interaction analysis.
2023cited by 5position: contributordoi
Human disease clinical treatment network for the elderly: analysis of the medicare inpatient length of stay and readmission data.
2023cited by 5position: contributordoi
Two-level Bayesian interaction analysis for survival data incorporating pathway information.
2023cited by 3position: contributordoi
Bi-level structured functional analysis for genome-wide association studies.
2023cited by 2position: contributordoi
Aligned deep neural network for integrative analysis with high-dimensional input
Journal of Biomedical Informatics 2023cited by 2position: contributordoi
A General Framework for Identifying Hierarchical Interactions and Its Application to Genomics Data
Journal of Computational and Graphical Statistics 2023cited by 2position: contributordoi
Survival Mixed Membership Blockmodel
Journal of the American Statistical Association 2023cited by 2position: contributordoi
FunctanSNP: an R package for functional analysis of dense SNP data (with interactions).
2023cited by 0position: contributordoi
Editorial.
2023cited by 0position: contributordoi

Grants

Unsupervised and Semisupervised Heterogeneity Analysis Based on Gaussian Graphical Models
NSF2209685$199,6612022–2026PIRePORTER
Collaborative Research: Integrating Multi-Dimensional Omics Data for Quantifying Disease Heterogeneity
NSF1916251$150,0002019–2023PIRePORTER
Collaborative Research: Novel methods for pharmacogenomic data analysis using gene clusters
NSF0904181$100,0002009–2013PIRePORTER
Collaborative Proposal: Novel Semiparametric Two-part Models: New Theories and Applications
NSF0805984$105,0002008–2012PIRePORTER

Frequent collaborators

· 72 papers (2019–2026) · 7 papers (2019–2025)Cen Wu · Kansas State University6 papers (2019–2025)Qingzhao Zhang · Xiamen University5 papers (2019–2026)Mengyun Wu · Shanghai University of Finance and Economics5 papers (2021–2023)Yaqing Xu · Shanghai Jiao Tong University School of Medicine4 papers (2025–2025)Kuangnan Fang · Xiamen University3 papers (2020–2025)Akiko Iwasaki · Yale University3 papers (2021–2023)Jian Huang · University of Iowa3 papers (2013–2014)Albert I. Ko · Yale University3 papers (2021–2023)Carolina Lucas · Yale University3 papers (2021–2023)Nathaniel Rothman · National Institutes of Health2 papers (2013–2014)Yawei Zhang · Shanghai Medical College of Fudan University2 papers (2013–2014)Yawei Zhang · Yale Cancer Center2 papers (2014–2017)Yifan Sun · 2 papers (2020–2021)Zhenqiu Lin · Center for Outcomes Research and Clinical Epidemiology2 papers (2021–2023)M. Catherine Muenker · Yale University2 papers (2021–2022)Valter Silva Monteiro · Universidade de São Paulo2 papers (2022–2023)Shelli Farhadian · Yale University2 papers (2022–2022)Melissa Campbell · Duke University2 papers (2022–2023)
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