Area of research
Molecular Biology · Epidemiology
Research interest
Research interests include Gut microbiota and health, Respiratory viral infections research, Pneumonia and Respiratory Infections, and Nosocomial Infections in ICU.
Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform
Acute Respiratory Distress Syndrome Molecular Phenotypes Have Distinct Lower Respiratory Tract Transcriptomes
Host–Microbe Multiomic Profiling Predicts Mortality in Sepsis
Host and Microbe Blood Metagenomics Reveals Key Pathways Characterizing Critical Illness Phenotypes
The antibiotic resistance reservoir of the lung microbiome expands with age in a population of critically ill patients
Impact of doxycycline post-exposure prophylaxis for sexually transmitted infections on the gut microbiome and antimicrobial resistome
Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children
Antibodies to repeat-containing antigens in Plasmodium falciparum are exposure-dependent and short-lived in children in natural malaria infections
Defining a research agenda for environmental wastewater surveillance of pathogens
Integrated host-microbe plasma metagenomics for sepsis diagnosis in a prospective cohort of critically ill adults
Metagenomic prediction of antimicrobial resistance in critically ill patients with lower respiratory tract infections
Lower respiratory tract infections in children requiring mechanical ventilation: a multicentre prospective surveillance study incorporating airway metagenomics
Discovering disease-causing pathogens in resource-scarce Southeast Asia using a global metagenomic pathogen monitoring system
Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries
Metagenomic next-generation sequencing of samples from pediatric febrile illness in Tororo, Uganda
Unbiased Metagenomic Sequencing for Pediatric Meningitis in Bangladesh Reveals Neuroinvasive Chikungunya Virus Outbreak and Other Unrealized Pathogens
Metagenomic comparison of tracheal aspirate and mini-bronchial alveolar lavage for assessment of respiratory microbiota
Microbiome and Antimicrobial Resistance Gene Dynamics in International Travelers
Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults
Pulmonary Metagenomic Sequencing Suggests Missed Infections in Immunocompromised Children
Metagenomic Sequencing Detects Respiratory Pathogens in Hematopoietic Cellular Transplant Patients