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Simon Rasmussen

Broad Institute · DK
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Genomics and Phylogenetic Studies, Forensic and Genetic Research, Gut microbiota and health, and Genetic Associations and Epidemiology.
h-index
74
citations
37,127
works
268
NIH funding
primary concept
Biology
email

Recent publications

Personalized molecular signatures of insulin resistance and type 2 diabetes
Cell 2025cited by 24position: middledoi
Discovery of drug–omics associations in type 2 diabetes with generative deep-learning models
Nature Biotechnology 2023cited by 104position: middledoi
Critical Assessment of Metagenome Interpretation: the second round of challenges
Nature Methods 2022cited by 390position: middledoi
Deep Learning for Cross-Diagnostic Prediction of Mental Disorder Diagnosis and Prognosis Using Danish Nationwide Register and Genetic Data
JAMA Psychiatry 2022cited by 37position: middledoi
Improved metagenome binning and assembly using deep variational autoencoders
Nature Biotechnology 2021cited by 676position: lastdoi
A reference map of potential determinants for the human serum metabolome
Nature 2020cited by 443position: middledoi
A draft genome sequence of the elusive giant squid, <i>Architeuthis dux</i>
GigaScience 2020cited by 77position: middledoi
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
Nature Communications 2019cited by 1,133position: middledoi
The population history of northeastern Siberia since the Pleistocene
Nature 2019cited by 443position: middledoi
The prehistoric peopling of Southeast Asia
Science 2018cited by 526position: middledoi
137 ancient human genomes from across the Eurasian steppes
Nature 2018cited by 505position: middledoi
The first horse herders and the impact of early Bronze Age steppe expansions into Asia
Science 2018cited by 449position: middledoi
Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
Nature 2018cited by 427position: middledoi
Ancient hepatitis B viruses from the Bronze Age to the Medieval period
Nature 2018cited by 230position: middledoi
Ancient nuclear genomes enable repatriation of Indigenous human remains
Science Advances 2018cited by 100position: middledoi
Ancient genomes show social and reproductive behavior of early Upper Paleolithic foragers
Science 2017cited by 369position: middledoi
Sequencing and de novo assembly of 150 genomes from Denmark as a population reference
Nature 2017cited by 174position: middledoi
Gene expression plasticity across hosts of an invasive scale insect species
PLoS ONE 2017cited by 20position: middledoi
A genomic history of Aboriginal Australia
Nature 2016cited by 686position: middledoi
Population genomics of Bronze Age Eurasia
Nature 2015cited by 1,626position: middledoi
Genomic evidence for the Pleistocene and recent population history of Native Americans
Science 2015cited by 571position: middledoi
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
Nature Biotechnology 2014cited by 1,302position: middledoi
The genome of a Late Pleistocene human from a Clovis burial site in western Montana
Nature 2014cited by 583position: middledoi
Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
Nature 2014cited by 387position: middledoi
Richness of human gut microbiome correlates with metabolic markers
Nature 2013cited by 4,734position: middledoi
Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
Nature 2013cited by 1,030position: middledoi
Transcriptome Responses to Combinations of Stresses in Arabidopsis  
PLANT PHYSIOLOGY 2013cited by 564position: firstdoi
Metagenomic species profiling using universal phylogenetic marker genes
Nature Methods 2013cited by 540position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Rasmus Nielsen · University of Copenhagen3 papers (2014–2018) · 3 papers (2013–2021)Eske Willerslev · University of Copenhagen3 papers (2014–2018)Anders Albrechtsen · University of Copenhagen2 papers (2017–2018)Martin Sikora · University of Copenhagen2 papers (2017–2018)Rosa Lundbye Allesøe · Technical University of Denmark2 papers (2021–2022)Ludovic Orlando · Centre National de la Recherche Scientifique2 papers (2017–2018)Morten E. Allentoft · University of Copenhagen2 papers (2014–2017)John Novembre · University of Chicago1 papers (2014–2014)Jonathan Terhorst · University of California, Berkeley1 papers (2018–2018)Peer Bork · European Bioinformatics Institute1 papers (2013–2013)Christopher Heje Grønbech · University of Copenhagen1 papers (2021–2021)Tomàs Marquès‐Bonet · Institució Catalana de Recerca i Estudis Avançats1 papers (2014–2014)Luís Pedro Coelho · Translational Research Institute1 papers (2013–2013) · 1 papers (2017–2017)S. Dusko Ehrlich · Queen Mary University of London1 papers (2013–2013) · 1 papers (2025–2025)David M. Hougaard · Statens Serum Institut1 papers (2022–2022)Ole Winther · University of Copenhagen1 papers (2021–2021)Nate B. Hardy · Auburn University1 papers (2017–2017)