Area of research
Plant Science · Molecular Biology
Research interest
Research interests include Chromosomal and Genetic Variations, Genomics and Phylogenetic Studies, Plant Disease Resistance and Genetics, and Plant Virus Research Studies.
Selection of GhTT2-A07 promoter enhances fiber quality in improved cotton varieties.
EDTA-GUI: a plant-optimized graphical implementation of the EDTA pipeline enabling lineage-level classification and analysis.
TEgenomeSimulator: A Flexible Framework for Simulating Genomes with Configurable Transposable Element Landscapes
The gene-like promoter and transcription of LTR retrotransposons
Solanum pan-genetics reveals paralogues as contingencies in crop engineering
Solanum pan-genetics reveals paralogues as contingencies in crop engineering.
TEtrimmer: a tool to automate the manual curation of transposable elements
The complete genome of a songbird
The complete genome of a songbird
Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partition.
Navigating the Maze of Maize Genomics: The Impact of Transposable Elements and Tandem Repeats.
PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes
Four Strategies for Whole-Genome Annotation of Transposable Elements and Repeats in Maize.
PrinTE: A Forward Simulation Framework for Studying the Role of Transposable Elements in Genome Expansion and Contraction
Differences in activity and stability drive transposable element variation in tropical and temperate maize.
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Evolutionary Dynamics of Chromatin Structure and Duplicate Gene Expression in Diploid and Allopolyploid Cotton
Evolutionary Dynamics of Chromatin Structure and Duplicate Gene Expression in Diploid and Allopolyploid Cotton.
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing
TEtrimmer: a novel tool to automate the manual curation of transposable elements
Solanum pan-genomics and pan-genetics reveal paralogs as contingencies in crop engineering
Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies.
Deciphering octoploid strawberry evolution with serial LTR similarity matrices for subgenome partition
Accelerating
<i>de novo</i>
SINE annotation in plant and animal genomes
Accelerating de novo SINE annotation in plant and animal genomes.
Approaching complete genomes, transcriptomes and epi-omes with accurate long-read sequencing.
A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.).
A haplotype resolved chromosome-scale assembly of North American wild apple Malus fusca and comparative genomics of the fire blight Mfu10 locus.
Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton
Evolutionary dynamics of chromatin structure and duplicate gene expression in diploid and allopolyploid cotton