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Allison J. Lopatkin

Massachusetts Institute of Technology · US
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Area of research
Molecular Medicine · Pollution
Research interest
Research focused on Antibiotics and Bacteria, with related work in Microbial metabolism, Antibiotic resistance, Lethality. Notable publications include 'Bacterial Metabolism and Antibiotic Efficacy', 'Clinically relevant mutations in core metabolic genes confer antibiotic resistance', and 'A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action'.
h-index
citations
1,930
works
8
NIH funding
primary concept
email

Recent publications

The role of bacterial metabolism in antimicrobial resistance
Nature Reviews Microbiology 2025cited by 98position: lastdoi
Population Ecology-Quantitative Microbial Risk Assessment (QMRA) Model for Antibiotic-Resistant and Susceptible <i>E. coli</i> in Recreational Water
Environmental Science & Technology 2025cited by 18position: middledoi
Selection and horizontal gene transfer underlie microdiversity-level heterogeneity in resistance gene fate during wastewater treatment
Nature Communications 2024cited by 73position: middledoi
Clinically relevant mutations in core metabolic genes confer antibiotic resistance
Science 2021cited by 350position: firstdoi
Predictive biology: modelling, understanding and harnessing microbial complexity
Nature Reviews Microbiology 2020cited by 171position: firstdoi
Bacterial Metabolism and Antibiotic Efficacy
Cell Metabolism 2019cited by 602position: middledoi
A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action
Cell 2019cited by 344position: middledoi
Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate
Nature Microbiology 2019cited by 274position: firstdoi

Grants

No grants ingested yet.

Frequent collaborators

James J. Collins · Broad Institute of MIT and Harvard5 papers (2019–2021)Jonathan Stokes · McMaster University3 papers (2019–2021)Jason H. Yang · Rutgers, The State University of New Jersey3 papers (2019–2021)Lucia Ramirez · Arizona State University1 papers (2025–2025) · 1 papers (2025–2025)Michael A. Kohanski · California University of Pennsylvania1 papers (2021–2021)Abigail L. Manson · Broad Institute of MIT and Harvard1 papers (2021–2021)Sarah C. Bening · Massachusetts Institute of Technology1 papers (2021–2021) · 1 papers (2025–2025)Lingchong You · Tsinghua University1 papers (2019–2019)Liqing Zhang · National University of Singapore1 papers (2024–2024) · 1 papers (2025–2025)Graham C. Walker · Massachusetts Institute of Technology1 papers (2019–2019)Sangeeta Satish · Boston University1 papers (2019–2019)Sarah N. Wright · University of California San Diego1 papers (2019–2019)Douglas McCloskey · Novo Nordisk Foundation1 papers (2019–2019)Amir Nili · Boston University1 papers (2019–2019)Zirui Zhao · University of Rochester Medical Center1 papers (2025–2025)Kerry A. Hamilton · Drexel University1 papers (2025–2025) · 1 papers (2019–2019)
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