← back to search

Sébastien Gagneux

Swiss Tropical and Public Health Institute · US
Area of research
Infectious Diseases · Epidemiology
Research interest
Research interests include Tuberculosis Research and Epidemiology, Mycobacterium research and diagnosis, Diagnosis and treatment of tuberculosis, and Infectious Diseases and Tuberculosis.
h-index
83
citations
27,404
works
367
NIH funding
primary concept
Tuberculosis
email

Recent publications

LysG-driven transcriptional network rewiring underlies lineage-specific phenotypes in Mycobacterium tuberculosis.
2026cited by 1position: contributordoi
Large-scale testing of antimicrobial lethality at single-cell resolution predicts mycobacterial infection outcomes.
2026cited by 1position: contributordoi
Within-host evolution of drug tolerance in <i>Mycobacterium tuberculosis</i>.
2026cited by 0position: contributordoi
Human genetic ancestry, <i>Mycobacterium tuberculosis</i> diversity, and tuberculosis disease severity in Dar es Salaam, Tanzania.
2026cited by 0position: contributordoi
Proteogenomic discovery of novel small proteins in clinical <i>Mycobacterium tuberculosis</i> strains
2026cited by 0position: contributordoi
Human genetic ancestry, Mycobacterium tuberculosis diversity, and tuberculosis disease severity in Dar es Salaam, Tanzania
eLife 2026cited by 0position: contributordoi
Ecology, global diversity and evolutionary mechanisms in the Mycobacterium tuberculosis complex.
2025cited by 31position: contributordoi
Transmission as a Key Driver of Resistance to the New Tuberculosis Drugs.
2025cited by 24position: contributordoi
Gene conversion and duplication contribute to genetic variation in an outbreak of &lt;i&gt;Mycobacterium tuberculosis&lt;/i&gt;.
2025cited by 8position: contributordoi
Onset of infectiousness explains differences in transmissibility across Mycobacterium tuberculosis lineages.
2025cited by 3position: contributordoi
Drug-induced differential culturability in diverse strains of Mycobacterium tuberculosis.
2025cited by 3position: contributordoi
Variability in intrinsic drug tolerance in &lt;i&gt;Mycobacterium tuberculosis&lt;/i&gt; corresponds with phylogenetic lineage.
2025cited by 2position: contributordoi
Clinical and bacterial determinants of unfavorable tuberculosis treatment outcomes: an observational study in Georgia.
2025cited by 2position: contributordoi
Granulysin Antimicrobial Activity Promotes Dormancy in Mycobacterium tuberculosis.
2025cited by 2position: contributordoi
Mycobacteria beyond disease.
2025cited by 1position: contributordoi
Clinical and bacterial determinants of unfavorable tuberculosis treatment outcomes: an observational study in Georgia
2025cited by 1position: contributordoi
Mycobacterium tuberculosis complex Lineage 1: A neglected cause of tuberculosis.
2025cited by 0position: contributordoi
Genome-to-genome analysis reveals associations between human and mycobacterial genetic variation in tuberculosis patients from Tanzania.
2025cited by 0position: contributordoi
Linking genetic and phenotypic bedaquiline resistance in Mycobacterium tuberculosis strains from Georgia.
2025cited by 0position: contributordoi
Epistasis between drug resistance-conferring mutations in <i>Mycobacterium tuberculosis</i>
2025cited by 0position: contributordoi
HIV co-infection is associated with reduced Mycobacterium tuberculosis transmissibility in sub-Saharan Africa.
2024cited by 11position: contributordoi
Bacterial diversity dominates variable macrophage responses of tuberculosis patients in Tanzania.
2024cited by 9position: contributordoi
A successful UN High-Level Meeting on antimicrobial resistance must build on the 2023 UN High-Level Meeting on tuberculosis
The Lancet Global Health 2024cited by 7position: middledoi
A successful UN High-Level Meeting on antimicrobial resistance must build on the 2023 UN High-Level Meeting on tuberculosis.
2024cited by 4position: contributordoi
A Genome-Focused Investigation Reveals the Emergence of a <i>Mycobacterium tuberculosis</i> Strain Related to Multidrug-Resistant Tuberculosis in the Amazon Region of Brazil.
2024cited by 2position: contributordoi
Genetic Characterization and Population Structure of Drug-Resistant <i>Mycobacterium tuberculosis</i> Isolated from Brazilian Patients Using Whole-Genome Sequencing.
2024cited by 1position: contributordoi
Diagnostic accuracy of a sequence-specific <i>Mtb</i>-DNA hybridization assay in urine: a case-control study including subclinical TB cases.
2024cited by 0position: contributordoi
Onset of infectiousness explains differences in transmissibility across <i>Mycobacterium tuberculosis</i> lineages
2024cited by 0position: contributordoi
Bedaquiline resistance in patients with drug-resistant tuberculosis in Cape Town, South Africa: a retrospective longitudinal cohort study
The Lancet Microbe 2023cited by 99position: middledoi
Clinical implications of molecular drug resistance testing for Mycobacterium tuberculosis: a 2023 TBnet/RESIST-TB consensus statement
The Lancet Infectious Diseases 2023cited by 83position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

· 49 papers (2019–2026)Stefan Niemann · University Hospital of Bern17 papers (2013–2023)Daniela Brites · Twin Cities Orthopedics16 papers (2019–2026)Christian Beisel · Board of the Swiss Federal Institutes of Technology14 papers (2019–2026)Klaus Reither · Swiss Tropical and Public Health Institute13 papers (2019–2023)Lukas Fenner · Zero to Three12 papers (2019–2023)Iñaki Comas · Centre for Biomedical Network Research on Rare Diseases11 papers (2019–2026)Sonia Borrell · Swiss Tropical and Public Health Institute10 papers (2019–2026)Dorothy Yeboah-Manu · Institute of Social and Preventive Medicine9 papers (2019–2021)Conor J. Meehan · Nottingham Trent University9 papers (2019–2025)Mireia Coscollá · Universitat de Barcelona9 papers (2012–2019)Amanda Ross · Swiss Tropical and Public Health Institute8 papers (2020–2025)Fabrizio Menardo · University of Zurich7 papers (2019–2021)Mireia Coscolla · Consejo Superior de Investigaciones Científicas7 papers (2019–2021)Chloe Loiseau · Swiss Tropical and Public Health Institute7 papers (2019–2026)Tanja Stadler · Institut für Tier-, Natur- und Umweltethik6 papers (2021–2025)Andrej Trauner · Swiss Tropical and Public Health Institute6 papers (2019–2026)Marcel Yotebieng · General Department of Preventive Medicine6 papers (2019–2023)Damien Portevin · University of Basel6 papers (2021–2026) · 6 papers (2012–2021)