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Jonathan H. Badger

United States Department of Health and Human Services ·
Area of research
Molecular Biology · Ecology
Research interest
Research interests include Genomics and Phylogenetic Studies, Gut microbiota and health, Microbial Community Ecology and Physiology, and Bacteriophages and microbial interactions.
h-index
52
citations
35,732
works
111
NIH funding
primary concept
Biology
email

Recent publications

Intestinal microbiota signatures of clinical response and immune-related adverse events in melanoma patients treated with anti-PD-1
Nature Medicine 2022cited by 424position: middledoi
Fecal microbiota transplant overcomes resistance to anti–PD-1 therapy in melanoma patients
Science 2021cited by 1,574position: middledoi
Dietary fiber and probiotics influence the gut microbiome and melanoma immunotherapy response
Science 2021cited by 859position: middledoi
Laboratory mice born to wild mice have natural microbiota and model human immune responses
Science 2019cited by 565position: middledoi
The Antimicrobial Peptide CRAMP Is Essential for Colon Homeostasis by Maintaining Microbiota Balance
The Journal of Immunology 2018cited by 90position: middledoi
Wild Mouse Gut Microbiota Promotes Host Fitness and Improves Disease Resistance
Cell 2017cited by 930position: middledoi
Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
eLife 2016cited by 169position: middledoi
Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation
PLoS Genetics 2016cited by 133position: middledoi
Draft genome sequences for the obligate bacterial predators Bacteriovorax spp. of four phylogenetic clusters
Standards in Genomic Sciences 2015cited by 17position: lastdoi
Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition
PLoS ONE 2014cited by 226position: middledoi
RNA-sequencing from single nuclei
Proceedings of the National Academy of Sciences 2013cited by 451position: middledoi
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum
Proceedings of the National Academy of Sciences 2013cited by 177position: middledoi
Structure, function and diversity of the healthy human microbiome
Nature 2012cited by 11,854position: middledoi
The Natural Product Domain Seeker NaPDoS: A Phylogeny Based Bioinformatic Tool to Classify Secondary Metabolite Gene Diversity
PLoS ONE 2012cited by 445position: middledoi
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic
The ISME Journal 2012cited by 122position: middledoi
The Ectocarpus Genome and Brown Algal Genomics
Advances in botanical research 2012cited by 21position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Andrew E. Allen · J. Craig Venter Institute3 papers (2012–2016)Mark Novotny · J. Craig Venter Institute2 papers (2013–2013)Christopher L. Dupont · J. Craig Venter Institute2 papers (2013–2016) · 2 papers (2012–2016)Kenneth H. Nealson · University of Southern California2 papers (2012–2013) · 2 papers (2012–2013)Roger S. Lasken · J. Craig Venter Institute2 papers (2013–2013)Eric E. Allen · Ocean Era (United States)2 papers (2012–2012) · 2 papers (2013–2013)Giorgio Trinchieri · National Cancer Institute2 papers (2017–2018) · 1 papers (2015–2015) · 1 papers (2013–2013)Sarah R. Smith · San Jose State University1 papers (2016–2016)Hamidreza Chitsaz · Shenzhen Sixth People's Hospital1 papers (2013–2013)Nan Li · China Academy of Information and Communications Technology1 papers (2015–2015)Jun Lee · University of Alabama at Birmingham1 papers (2013–2013)Xiaohong Yao · Ministry of Education of the People's Republic of China1 papers (2018–2018) · 1 papers (2016–2016)Jiamin Zhou · Jiangsu University1 papers (2018–2018) · 1 papers (2013–2013)