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Mehrtash Babadi

Broad Institute · US
Area of research
Molecular Biology · Atomic and Molecular Physics, and Optics
Research interest
Research interests include Single-cell and spatial transcriptomics, Cold Atom Physics and Bose-Einstein Condensates, Cell Image Analysis Techniques, and Physics of Superconductivity and Magnetism.
h-index
23
citations
5,083
works
79
NIH funding
primary concept
Biology
email

Recent publications

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients
Genome biology 2025cited by 6position: middledoi
Robust self-supervised denoising of voltage imaging data using CellMincer
bioRxiv (Cold Spring Harbor Laboratory) 2024cited by 6position: lastdoi
High-throughput RNA isoform sequencing using programmed cDNA concatenation
Nature Biotechnology 2023cited by 168position: middledoi
High-depth sequencing characterization of viral dynamics across tissues in fatal COVID-19 reveals compartmentalized infection
Nature Communications 2023cited by 23position: middledoi
Natural history of Ebola virus disease in rhesus monkeys shows viral variant emergence dynamics and tissue-specific host responses
Cell Genomics 2023cited by 4position: middledoi
Rare coding variation provides insight into the genetic architecture and phenotypic context of autism
Nature Genetics 2022cited by 602position: middledoi
Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness
Science 2022cited by 345position: middledoi
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets
Nature 2021cited by 875position: middledoi
Rare coding variation illuminates the allelic architecture, risk genes, cellular expression patterns, and phenotypic context of autism
medRxiv 2021cited by 35position: middledoi
Cancer-Germline Antigen Expression Discriminates Clinical Outcome to CTLA-4 Blockade
Cell 2018cited by 170position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Daniel J. Park · Broad Institute2 papers (2022–2023)Nikolaos Barkas · Harvard University2 papers (2022–2023)Pardis C. Sabeti · Broad Institute2 papers (2022–2023)Bronwyn MacInnis · Broad Institute2 papers (2022–2023)S. F. Schaffner · Augusta University2 papers (2022–2023)Matteo Bosso · University of Massachusetts Chan Medical School1 papers (2022–2022)Aziz Al’Khafaji · Broad Institute1 papers (2023–2023)Isaac H. Solomon · Harvard University1 papers (2023–2023)Alison Walker · South Western Ambulance Service NHS Foundation Trust1 papers (2024–2024) · 1 papers (2024–2024)Zoe Levine · Broad Institute1 papers (2023–2023)Tianle Ma · Guizhou Normal University1 papers (2024–2024)Katherine J. Siddle · Brown University1 papers (2023–2023)Anthony Philippakis · Broad Institute1 papers (2023–2023)Genevieve M. Boland · Harvard University1 papers (2023–2023)Fritz Obermeyer · University of San Francisco1 papers (2022–2022) · 1 papers (2023–2023) · 1 papers (2023–2023)Robert F. Padera · Harvard University1 papers (2023–2023)Stephen J. Fleming · Broad Institute1 papers (2024–2024)