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Tomasz Kościółek

Jagiellonian University · PL
Area of research
Molecular Biology · Dermatology
Research interest
Research interests include Gut microbiota and health, Protein Structure and Dynamics, Dermatology and Skin Diseases, and Metabolomics and Mass Spectrometry Studies.
h-index
32
citations
37,839
works
114
NIH funding
primary concept
Microbiome
email

Recent publications

Analysis of metagenomic data
Nature Reviews Methods Primers 2025cited by 47position: middledoi
Gut microbiome and cognitive function in the Hispanic Community Health Study/Study of Latinos
Journal of Alzheimer s Disease 2025cited by 2position: middledoi
Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats
Nature Communications 2025cited by 1position: middledoi
Robustness of cancer microbiome signals over a broad range of methodological variation
Oncogene 2024cited by 61position: middledoi
Retraction Note: Microbiome analyses of blood and tissues suggest cancer diagnostic approach
Nature 2024cited by 19position: middledoi
Sequence-structure-function relationships in the microbial protein universe
Nature Communications 2023cited by 99position: lastdoi
Structure-based protein function prediction using graph convolutional networks
Nature Communications 2021cited by 882position: middledoi
Structure-based protein function prediction using graph convolutional networks.
2021cited by 77position: middle
RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancerdiagnostic approach
Nature 2020cited by 1,036position: middledoi
QIIME 2 Enables Comprehensive End‐to‐End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data
Current Protocols in Bioinformatics 2020cited by 545position: middledoi
Gut microbiome in Schizophrenia: Altered functional pathways related to immune modulation and atherosclerotic risk
Brain Behavior and Immunity 2020cited by 81position: middledoi
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology 2019cited by 23,536position: middledoi
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology 2019cited by 863position: middledoi
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea
Nature Communications 2019cited by 409position: middledoi
The impact of skin care products on skin chemistry and microbiome dynamics
BMC Biology 2019cited by 245position: middledoi
IL-4Rα Blockade by Dupilumab Decreases Staphylococcus aureus Colonization and Increases Microbial Diversity in Atopic Dermatitis
Journal of Investigative Dermatology 2019cited by 213position: middledoi
Gut microbiome in serious mental illnesses: A systematic review and critical evaluation
Schizophrenia Research 2019cited by 77position: middledoi
Best practices for analysing microbiomes
Nature Reviews Microbiology 2018cited by 1,882position: middledoi
American Gut: an Open Platform for Citizen Science Microbiome Research
mSystems 2018cited by 897position: middledoi
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018cited by 883position: middledoi
Qiita: rapid, web-enabled microbiome meta-analysis
Nature Methods 2018cited by 699position: middledoi
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018cited by 581position: middledoi
Differences in gut microbiome composition between persons with chronic schizophrenia and healthy comparison subjects
Schizophrenia Research 2018cited by 255position: middledoi
Overview and systematic review of studies of microbiome in schizophrenia and bipolar disorder
Journal of Psychiatric Research 2018cited by 213position: middledoi
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
2018cited by 190position: middledoi
Gut microbiome and magnetic resonance spectroscopy study of subjects at ultra-high risk for psychosis may support the membrane hypothesis
European Psychiatry 2018cited by 123position: middledoi
A communal catalogue reveals Earth’s multiscale microbial diversity
Nature 2017cited by 2,863position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Rob Knight · University of California San Diego17 papers (2018–2025)Austin D. Swafford · Health Alliance International6 papers (2018–2024)Daniel McDonald · University of Zurich6 papers (2018–2024)Qiyun Zhu · Central South University6 papers (2018–2024)Stefan Janssen · German Research Centre for Artificial Intelligence6 papers (2018–2024)Dilip V. Jeste · Global Development Network4 papers (2018–2020)Bryn C. Taylor · University of California San Diego4 papers (2018–2023)Robert K. Heaton · Neurobehavioral Research (United States)3 papers (2020–2024)I. Fisk · University of Nottingham3 papers (2021–2023)Serena Fraraccio · University of California San Diego3 papers (2020–2024)P. Douglas Renfrew · New York University3 papers (2021–2023)Julia Koehler Leman · New York University3 papers (2021–2023)Chris Chandler · London Metropolitan University3 papers (2021–2023)Se Jin Song · Wonkwang University3 papers (2020–2024)Carolina S. Carpenter · Scripps Institution of Oceanography3 papers (2020–2024)Chris Callewaert · Ghent University3 papers (2018–2019)Evguenia Kopylova · OncoMed (United States)3 papers (2020–2024)Yoshiki Vázquez‐Baeza · University of California, San Francisco3 papers (2018–2020)J. Gregory Caporaso · Northern Arizona University3 papers (2018–2020)Sandrine Miller‐Montgomery · La Jolla Bioengineering Institute3 papers (2020–2024)