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Edward C. Holmes

The University of Sydney · AU
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Area of research
Infectious Diseases · Animal Science and Zoology
Research interest
Research interests include Viral Infections and Vectors, Animal Virus Infections Studies, Mosquito-borne diseases and control, and Plant Virus Research Studies.
h-index
164
citations
135,463
works
1,188
NIH funding
primary concept
Biology
email

Recent publications

Viral diversity, ecological interconnectedness, and the identification of mammalian chuviruses in Australian microbats.
2026cited by 0position: contributordoi
The origins and potential cross-species transmission of paramyxoviruses and other RNA viruses between native snakes and invasive Burmese pythons in the Florida Everglades.
2026cited by 0position: contributordoi
Limited effect of short- to mid-term storage conditions on an Australian farmland soil RNA virome.
2026cited by 0position: contributordoi
Ecological factors and genetic features are associated with ecological generalism in pathogenic tick-borne viruses.
2026cited by 0position: contributordoi
Genomic features associated with sustained mammalian transmission of avian influenza A viruses.
2026cited by 0position: contributordoi
Dynamics and ecology of a multistage expansion of Oropouche virus in Brazil.
2026cited by 0position: contributordoi
Longitudinal Epidemiology and Variant Dynamics of SARS-CoV-2 in Coastal Kenya (2020-2025): Clinical Features and Wave Patterns.
2026cited by 0position: contributordoi
Host innate immune response profiling reveals hidden viral infections across diverse animal species
2026cited by 0position: contributordoi
The Inter-Pandemic Generation Represent An Expanding Gap in Population Immunity against a Novel Sarbecovirus of High Pandemic Potential
2026cited by 0position: contributordoi
RNA virus discovery in Australian camelids reveals divergent picornaviruses and the convergent evolution of upstream ORFs
2026cited by 0position: contributordoi
ViraHInter: a dual-modal artificial intelligence framework for predicting virus-host interactions
2026cited by 0position: contributordoi
Artificial intelligence for modelling infectious disease epidemics
Nature 2025cited by 124position: contributordoi
Artificial intelligence for modelling infectious disease epidemics
Nature 2025cited by 123position: middledoi
Generalized biological foundation model with unified nucleic acid and protein language
Nature Machine Intelligence 2025cited by 21position: middledoi
Extensive cross-species transmission of pathogens and antibiotic resistance genes in mammals neglected by public health surveillance
Cell 2025cited by 17position: middledoi
Travel-associated international spread of Oropouche virus beyond the Amazon
Journal of Travel Medicine 2025cited by 16position: middledoi
Attenuation of virulence in <i>Yersinia pestis</i> across three plague pandemics
Science 2025cited by 13position: middledoi
The diversity, pathogenic spectrum, and ecological significance of arthropod viruses
Trends in Microbiology 2025cited by 12position: middledoi
Diversity and cross-species transmission of viruses in a remote island ecosystem: implications for wildlife conservation.
2025cited by 9position: contributordoi
Attenuation of virulence in &lt;i&gt;Yersinia pestis&lt;/i&gt; across three plague pandemics.
2025cited by 5position: contributordoi
Recent advances in the inference of deep viral evolutionary history
Journal of Virology 2025cited by 5position: middledoi
Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived
Virus Evolution 2025cited by 5position: middledoi
Identification of coxsackievirus A24 variant during an acute hemorrhagic conjunctivitis outbreak in coastal Kenya, 2024.
2025cited by 3position: contributordoi
Predicting the Evolutionary and Functional Landscapes of Viruses with a Unified Nucleotide-Protein Language Model: LucaVirus
2025cited by 3position: contributordoi
Genomic and clinical epidemiology of SARS-CoV-2 in coastal Kenya: insights into variant circulation, reinfection, and multiple lineage importations during a post-pandemic wave
BMC Global and Public Health 2025cited by 3position: middledoi
Re-emergence of Yellow Fever Virus in Brazil: Evidence from Forest and peri-urban Settings
medRxiv 2025cited by 3position: middledoi
Phylogenomics redefines the evolutionary history of mosquitoes.
2025cited by 2position: contributordoi
Insect-specific Alphamesonivirus-1 (&lt;i&gt;Mesoniviridae&lt;/i&gt;) in lymph node and lung tissues from two horses with acute respiratory syndrome.
2025cited by 2position: contributordoi
Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived.
2025cited by 2position: contributordoi
Coxsackievirus A24 variant whole genome sequencing from clinical samples using a three overlapping amplicons strategy
2025cited by 2position: contributordoi

Grants

No grants ingested yet.

Frequent collaborators

· 237 papers (2019–2026)Mǎng Shī · National Sun Yat-sen University49 papers (2012–2025)Jemma Geoghegan · National Institute of Water and Atmospheric Research33 papers (2020–2025)Jonathon C.O. Mifsud · Macquarie University22 papers (2021–2025)John-Sebastian Eden · University of Münster22 papers (2019–2025)Andrew Rambaut · University of Edinburgh21 papers (2015–2025)John‐Sebastian Eden · The University of Sydney20 papers (2013–2024)Jemma L. Geoghegan · University of Otago20 papers (2014–2023)Michelle Wille · The University of Melbourne18 papers (2019–2025)Jun-Hua Tian · Jiaxing University17 papers (2013–2024)Mang Shi · Sun Yat-sen University Cancer Center16 papers (2019–2025)Jun Li · Inner Mongolia University of Technology15 papers (2012–2025) · 15 papers (2013–2023)Sebastián Duchêne · Institut Pasteur15 papers (2014–2023)Oliver G. Pybus · Royal Veterinary College14 papers (2012–2021)Yǒng-Zhèn Zhāng · Fudan University13 papers (2013–2023)Michelle Wille · The University of Sydney13 papers (2018–2023)Philippe Lemey · KU Leuven13 papers (2012–2025)Weifeng Shi · Institute of Virology of the Slovak Academy of Sciences13 papers (2020–2025)Yong‐Zhen Zhang · Fudan University12 papers (2015–2022)
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