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Kenneth M. Merz

University of Florida · US
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Area of research
Molecular Biology · History and Philosophy of Science
Research interest
Research focused on Computational science and Replica, with related work in Graphics, QM/MM, Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Notable publications include 'Amber 2021: Reference Manual', 'Recent Developments in Amber Biomolecular Simulations', and 'Quantum Mechanics/Molecular Mechanics Simulations on NVIDIA and AMD Graphics Processing Units'.
h-index
citations
2,255
works
12
NIH funding
primary concept
email

Recent publications

Recent Developments in Amber Biomolecular Simulations
Journal of Chemical Information and Modeling 2025cited by 76position: lastdoi
Cooperative and inhibitory ion transport in functionalized angstrom-scale two-dimensional channels
Nature Communications 2025cited by 7position: middledoi
Amber free energy tools: Interoperable software for free energy simulations using generalized quantum mechanical/molecular mechanical and machine learning potentials
The Journal of Chemical Physics 2024cited by 16position: middledoi
AmberTools
Journal of Chemical Information and Modeling 2023cited by 1,758position: lastdoi
Quantum Mechanics/Molecular Mechanics Simulations on NVIDIA and AMD Graphics Processing Units
Journal of Chemical Information and Modeling 2023cited by 50position: lastdoi
Geometry Optimization: A Comparison of Different Open-Source Geometry Optimizers
Journal of Chemical Theory and Computation 2023cited by 18position: lastdoi
Computer-aided drug design, quantum-mechanical methods for biological problems
Current Opinion in Structural Biology 2022cited by 45position: lastdoi
Primer for Designing Main Protease (M<sup>pro</sup>) Inhibitors of SARS-CoV-2
The Journal of Physical Chemistry Letters 2022cited by 19position: middledoi
Amber 2021: Reference Manual
Open Repository and Bibliography (University of Luxembourg) 2021cited by 171position: middle
Open-Source Multi-GPU-Accelerated QM/MM Simulations with AMBER and QUICK
Journal of Chemical Information and Modeling 2021cited by 47position: middledoi
Harnessing the Power of Multi-GPU Acceleration into the Quantum Interaction Computational Kernel Program
Journal of Chemical Theory and Computation 2021cited by 42position: middledoi
MRP.py: A Parametrizer of Post-Translationally Modified Residues
Journal of Chemical Information and Modeling 2020cited by 6position: middledoi
Computer-Aided Drug Design: Using Numbers to Your Advantage
ACS Medicinal Chemistry Letters 2013cited by 21position: lastdoi

Grants

No grants ingested yet.

Frequent collaborators

Andreas W. Götz · San Diego Supercomputer Center6 papers (2021–2024)Madushanka Manathunga · Michigan State University5 papers (2021–2023)Hasan Metin Aktulga · Michigan State University3 papers (2021–2024)Vinícius Wilian D. Cruzeiro · SLAC National Accelerator Laboratory2 papers (2021–2021)Patrick H. Donnan · University of Michigan1 papers (2020–2020)L. T. Sun · University of Chicago1 papers (2025–2025)Gaurav Sharma · Austen Riggs Center1 papers (2022–2022)Zhen Li · Michigan State University1 papers (2025–2025)Chong Liu · Jiangxi Normal University1 papers (2025–2025)Qian Chen · University of Illinois Chicago1 papers (2025–2025)Kang Xu · Carnegie Mellon University1 papers (2025–2025)Chi Jin · Princeton University1 papers (2021–2021)Kamesh Arumugam · Nvidia (United States)1 papers (2021–2021)Yipu Miao · University of Florida1 papers (2021–2021)Timothy J. Giese · Rutgers Sexual and Reproductive Health and Rights1 papers (2024–2024)Melek N. Ucisik · University of Florida1 papers (2013–2013) · 1 papers (2024–2024)Gangbin Yan · University of Chicago1 papers (2025–2025)Abhishek Thakur · Temple College1 papers (2022–2022)John C. Faver · University of Florida1 papers (2013–2013)
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