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Søren Michael Karst

Columbia University · US
Area of research
Ecology · Molecular Biology
Research interest
Research focused on Computational biology and Tree (set theory), with related work in Nanopore sequencing, Microbiome, Amplicon. Notable publications include 'Greengenes2 unifies microbial data in a single reference tree', 'High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing', and 'Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity'.
h-index
citations
1,192
works
3
NIH funding
primary concept
email

Recent publications

Greengenes2 unifies microbial data in a single reference tree
Nature Biotechnology 2023cited by 563position: middledoi
Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity
Nature Microbiology 2022cited by 181position: middledoi
High-accuracy long-read amplicon sequences using unique molecular identifiers with Nanopore or PacBio sequencing
Nature Methods 2021cited by 448position: firstdoi

Grants

No grants ingested yet.

Frequent collaborators

Daniel McDonald · University of Zurich2 papers (2021–2023)Rob Knight · University of California San Diego2 papers (2021–2023)Mads Albertsen · Aalborg University2 papers (2021–2023)Qiyun Zhu · Central South University2 papers (2021–2023)Kalen Cantrell · University of California San Diego1 papers (2023–2023)Antonio González · Karolinska University Hospital1 papers (2023–2023)Se Jin Song · Wonkwang University1 papers (2023–2023) · 1 papers (2021–2021)Todd Z. DeSantis · Second Genome (United States)1 papers (2023–2023)Ryan Ziels · Human Genome Sciences (United States)1 papers (2021–2021)Susan Cheng · University of San Francisco1 papers (2023–2023)Andrew Bartko · University of California San Diego1 papers (2023–2023)Yueyu Jiang · University of San Diego1 papers (2023–2023)Aki S. Havulinna · University of Helsinki1 papers (2023–2023)Michael Inouye · Baker Heart and Diabetes Institute1 papers (2023–2023)James T. Morton · Systems Analytics (United States)1 papers (2023–2023)Donovan H. Parks · Ecogenomics (Japan)1 papers (2023–2023)Veikko Salomaa · Varsinais-Suomen Sairaanhoitopiiri1 papers (2023–2023) · 1 papers (2021–2021)Philip Hugenholtz · Ecogenomics (Japan)1 papers (2023–2023)