Area of research
Virology · Infectious Diseases
Research interest
Research focused on Human immunodeficiency virus (HIV) and Computational biology, with related work in Coronavirus disease 2019 (COVID-19), Genome, Coevolution. Notable publications include 'Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research', 'HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics', and 'An integrated map of HIV genome-wide variation from a population perspective'.
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes
SANTA-SIM: simulating viral sequence evolution dynamics under selection and recombination
VIRULIGN: fast codon-correct alignment and annotation of viral genomes
Within-patient mutation frequencies reveal fitness costs of CpG dinucleotides and drastic amino acid changes in HIV
The impact of HIV-1 within-host evolution on transmission dynamics
An integrated map of HIV genome-wide variation from a population perspective
A new ensemble coevolution system for detecting HIV-1 protein coevolution
CRF19_cpx is an Evolutionary fit HIV-1 Variant Strongly Associated With Rapid Progression to AIDS in Cuba
Genetic Diversity and Selective Pressure in Hepatitis C Virus Genotypes 1–6: Significance for Direct-Acting Antiviral Treatment and Drug Resistance
HIV-1 genotypic drug resistance testing: digging deep, reaching wide?
HIV-1 subtype distribution and its demographic determinants in newly diagnosed patients in Europe suggest highly compartmentalized epidemics
Functional conservation of HIV-1 Gag: implications for rational drug design
HIV-1 Subtype Is an Independent Predictor of Reverse Transcriptase Mutation K65R in HIV-1 Patients Treated with Combination Antiretroviral Therapy Including Tenofovir