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Yang Yang

University of California, San Francisco · US
Area of research
Molecular Biology · Computational Theory and Mathematics
Research interest
Research interests include Computational Drug Discovery Methods, Machine Learning in Bioinformatics, X-ray Diffraction in Crystallography, and RNA and protein synthesis mechanisms.
h-index
36
citations
5,382
works
269
NIH funding
primary concept
email

Recent publications

BatGPT-Chem: A Foundation Large Model for Chemical Engineering
Research 2025cited by 6position: middledoi
REUNION: transcription factor binding prediction and regulatory association inference from single-cell multi-omics data
Bioinformatics 2024cited by 6position: firstdoi
Explorative study using ultrasound time-harmonic elastography for stiffness-based quantification of skeletal muscle function
Zeitschrift für Medizinische Physik 2024cited by 5position: firstdoi
Multicenter, single-arm, phase II trial of camrelizumab and chemotherapy as neoadjuvant treatment for locally advanced esophageal squamous cell carcinoma
Journal for ImmunoTherapy of Cancer 2022cited by 275position: middledoi
Predicting therapeutic drugs for hepatocellular carcinoma based on tissue-specific pathways
PLoS Computational Biology 2021cited by 71position: middledoi
Prioritization of candidate cancer drugs based on a drug functional similarity network constructed by integrating pathway activities and drug activities
Molecular Oncology 2019cited by 27position: middledoi
The lncLocator: a subcellular localization predictor for long non-coding RNAs based on a stacked ensemble classifier
Bioinformatics 2018cited by 428position: middledoi
Druggable negative allosteric site of P2X3 receptors
Proceedings of the National Academy of Sciences 2018cited by 119position: middledoi
MiRGOFS: a GO-based functional similarity measurement for miRNAs, with applications to the prediction of miRNA subcellular localization and miRNA–disease association
Bioinformatics 2018cited by 71position: firstdoi
Deciphering the multicomponent synergy mechanism from a systems pharmacology perspective: Application to Gualou Xiebai Decoction for coronary heart disease
Journal of Functional Foods 2018cited by 25position: firstdoi
Prediction of Molecular Mechanisms for LianXia NingXin Formula: A Network Pharmacology Study
Frontiers in Physiology 2018cited by 22position: firstdoi
MemBrain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction
Nano-Micro Letters 2017cited by 47position: middledoi
Hum-mPLoc 3.0: prediction enhancement of human protein subcellular localization through modeling the hidden correlations of gene ontology and functional domain features
Bioinformatics 2016cited by 105position: middledoi
Compound Danshen tablets downregulate amyloid protein precursor mRNA expression in a transgenic cell model of Alzheimer's disease: Effects and a comparison with donepezil.
PubMed 2012cited by 6position: middledoi

Grants

CAREER: Dynamic Catalyst Evolution from Atoms to Active Nanostructures Probed by Operando Methods
NSF2544087$799,8482026–2031PIRePORTER
CAREER: Understanding Intermediate Sulfur Phases for Enhanced Energy Storage
NSF2541871$619,8382026–2031PIRePORTER
CAREER: Tailoring Light-Matter Interactions in Perovskite-Based Molecular Metamaterials for Quantum-Informed Photonic Technologies.
NSF2543958$549,7252026–2031PIRePORTER
REU Site: AI Research for Intelligent Systems and Efficiency
NSF2548190$498,6272026–2029PIRePORTER
Collaborative Research: SaTC 2.0: RES: AIGIS: Securing the Deep Learning Model Supply Chain
NSF2526620$410,0002026–2030PIRePORTER
CAREER: Data-Driven Learning of Interpretable and Extrapolative Models of Complex Systems with Sparse Data
NSF2544082$394,3702026–2031PIRePORTER
CAREER: CAS-Climate: Forecast-informed Flexible Reservoir System Modeling Enabled by Artificial Intelligence Algorithms Using Subseasonal-to-Seasonal Hydroclimatological Forecasts
NSF2618864$385,7372026–2028PIRePORTER
Postdoctoral Fellowship: MSPRF: Combinatorial and Topological Properties of Triangulated Manifolds
NSF2602353$190,0002026–2030PIRePORTER
Quantitative Analysis on High-Contrast Composite Materials
NSF2550221$157,0212026–2028PIRePORTER
Collaborative Research: NeTS: Medium: CAML: Communication-constrained Adaptive Machine Learning in Heterogeneous Edge Networks
NSF2504762$1,200,0002025–2028PIRePORTER
Collaborative Research: CAIG: Reliable Generative Downscaling for Geoscience Data
NSF2530596$500,0002025–2028PIRePORTER
Probing the Active Tensioning Response Under Sustained Strain in Epithelial Cells
NSF2450416$489,8742025–2028PIRePORTER
ENG/ECCS-EPSRC Advanced Interband Cascade Lasers with Innovative Quantum Well Active Regions Grown on Si Substrates
NSF2545143$397,0802025–2028PIRePORTER
Collaborative Research: Human-centered AI for Reconfigurable Manufacturing Operation and desigN sYnthesis (HARMONY)
NSF2531899$259,9912025–2028PIRePORTER
Collaborative Research: 2D Chiral Fingerprint Metasensor Empowered by Machine Learning for Chiral Molecule Sensing
NSF2529078$255,7072025–2028PIRePORTER
LEAPS-MPS: Correlated Methods for Correlated Phases
NSF2532734$247,9962025–2027PIRePORTER
Twisted semiconductors in the semiclassical regime
NSF2554813$120,0002025–2027PIRePORTER

Frequent collaborators

Hong‐Bin Shen · Ministry of Education of the People's Republic of China4 papers (2016–2018)Rui Wang · Shenyang Pharmaceutical University1 papers (2018–2018)Xu Zhang · Shandong University1 papers (2021–2021)Wei Xiao · Fudan University1 papers (2018–2018)Ming Zhang · Shanghai Jiao Tong University1 papers (2022–2022)Yunpeng Zhang · Harbin Medical University1 papers (2019–2019)Li P · Nantong University1 papers (2018–2018)Zhichao Liu · Weifang Medical University1 papers (2022–2022)Xing Su · Shihezi University1 papers (2018–2018)Zhenzhong Wang · South China Agricultural University1 papers (2018–2018)Yonghua Wang · Medical College of Wisconsin1 papers (2018–2018)Yifeng Sun · Shanghai Medical College of Fudan University1 papers (2022–2022)Siyao Liu · Harbin Medical University1 papers (2019–2019)Hua Hu · Columbia University1 papers (2012–2012)Fei Xie · Hubei University of Medicine1 papers (2021–2021)Xiaofeng Fu · Southwestern Medical Center1 papers (2018–2018) · 1 papers (2022–2022)Fengdan Xu · Nantong University1 papers (2021–2021)Hao Teng · Harbin Medical University1 papers (2018–2018)Renquan Zhang · Sun Yat-sen University Cancer Center1 papers (2022–2022)