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Jianxin Shi

Tianjin University · CN
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Genetic Associations and Epidemiology, Gut microbiota and health, Epigenetics and DNA Methylation, and Cancer Genomics and Diagnostics.
h-index
79
citations
29,961
works
434
NIH funding
primary concept
email

Recent publications

The mutagenic forces shaping the genomes of lung cancer in never smokers
Nature 2025cited by 32position: middledoi
Oral Microbiome Profile of the US Population
JAMA Network Open 2025cited by 25position: middledoi
APOBEC affects tumor evolution and age at onset of lung cancer in smokers
Nature Communications 2025cited by 7position: middledoi
Uncovering the role of LINE-1 in the evolution of lung adenocarcinoma
Nature 2025cited by 5position: middledoi
Microbiome analysis of 940 lung cancers in never-smokers reveals lack of clinically relevant associations
Nature Communications 2025cited by 2position: middledoi
Genome-wide association study of lung adenocarcinoma in East Asia and comparison with a European population
Nature Communications 2023cited by 67position: firstdoi
Causal relationships between risk of venous thromboembolism and 18 cancers: a bidirectional Mendelian randomization analysis
International Journal of Epidemiology 2023cited by 2position: middledoi
Causal relationships between risk of venous thromboembolism and 18 cancers: a bidirectional Mendelian randomisation analysis
medRxiv 2023cited by 1position: middledoi
Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey
The Lancet Microbe 2022cited by 32position: middledoi
Genomic and evolutionary classification of lung cancer in never smokers
Nature Genetics 2021cited by 233position: middledoi
Associations of fecal microbial profiles with breast cancer and nonmalignant breast disease in the Ghana Breast Health Study
International Journal of Cancer 2021cited by 80position: middledoi
Comparison of fecal and oral collection methods for studies of the human microbiota in two Iranian cohorts
BMC Microbiology 2021cited by 34position: middledoi
Mid-term follow-up surgical results in 284 cases of clival chordomas: the risk factors for outcome and tumor recurrence
Neurosurgical Review 2021cited by 30position: middledoi
Minimal phenotyping yields genome-wide association signals of low specificity for major depression
Nature Genetics 2020cited by 371position: middledoi
Allele-specific open chromatin in human iPSC neurons elucidates functional disease variants
Science 2020cited by 141position: middledoi
The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
Nature Communications 2020cited by 37position: middledoi
Sex-Dependent Shared and Non-Shared Genetic Architecture Across Mood and Psychotic Disorders
bioRxiv (Cold Spring Harbor Laboratory) 2020cited by 27position: middledoi
Genome-Wide Association Study Data Reveal Genetic Susceptibility to Chronic Inflammatory Intestinal Diseases and Pancreatic Ductal Adenocarcinoma Risk
Cancer Research 2020cited by 9position: middledoi
A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer
Queensland's institutional digital repository (The University of Queensland) 2020cited by 0position: middle
A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer
JNCI Journal of the National Cancer Institute 2019cited by 91position: middledoi
Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression
Biological Psychiatry 2019cited by 45position: middledoi
The respiratory tract microbiome and its relationship to lung cancer and environmental exposures found in rural china
Environmental and Molecular Mutagenesis 2019cited by 38position: middledoi
Genome-wide Burden of Rare Short Deletions Is Enriched in Major Depressive Disorder in Four Cohorts
Biological Psychiatry 2019cited by 35position: middledoi
Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations
PLoS ONE 2019cited by 34position: middledoi
Comparison of Oral Collection Methods for Studies of Microbiota
Cancer Epidemiology Biomarkers & Prevention 2018cited by 47position: middledoi
Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16–17, 2017
Microbiome 2018cited by 29position: middledoi
The genomic and epigenomic evolutionary history of papillary renal cell carcinomas
bioRxiv (Cold Spring Harbor Laboratory) 2018cited by 5position: middledoi
Abstract 2185: Multiple region whole-genome sequencing reveals intratumor heterogeneity and branching clonal architecture of non-clear-cell renal cell carcinoma
Cancer Research 2018cited by 0position: middledoi
Allele-specific expression reveals interactions between genetic variation and environment
Nature Methods 2017cited by 175position: middledoi
Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci
Cell stem cell 2017cited by 126position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Rashmi Sinha · New York University10 papers (2013–2021)Emily Vogtmann · National Institutes of Health9 papers (2015–2025)Xing Hua · Isesaki Fukushima Hospital8 papers (2015–2025)Rob Knight · University of California San Diego8 papers (2015–2025)James J. Goedert · National Cancer Institute7 papers (2012–2021)Jubao Duan · NorthShore University HealthSystem5 papers (2013–2020)Yunhu Wan · Leidos (United States)5 papers (2019–2025)Autumn G. Hullings · University of North Carolina at Chapel Hill5 papers (2019–2025)Amnon Amir · Sheba Medical Center4 papers (2015–2019)Christian C. Abnet · National Institutes of Health4 papers (2017–2025)Alan R. Sanders · Genomic Health (United States)4 papers (2013–2020)Nicholas Chia · Argonne National Laboratory4 papers (2015–2019) · 4 papers (2013–2017)Pablo V. Gejman · University of Chicago4 papers (2013–2020)Roberto Flores · Seqirus (United States)3 papers (2012–2015) · 3 papers (2013–2014)Habibul Ahsan · Netherlands Heart Institute3 papers (2017–2019)Richard B. Hayes · NYU Langone Health3 papers (2013–2016)Joshua N. Sampson · National Institutes of Health3 papers (2014–2016)Montserrat García‐Closas · Commonwealth Education Trust3 papers (2016–2021)