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Yi‐Ping Phoebe Chen

New York University · US
Area of research
Molecular Biology · Computer Vision and Pattern Recognition
Research interest
Research focused on Disease and Graph, with related work in Identification (biology), Artificial intelligence, Interpretability. Notable publications include 'Balanced Contrastive Learning for Long-Tailed Visual Recognition', 'HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis', and 'GANLDA: Graph attention network for lncRNA-disease associations prediction'.
h-index
citations
1,321
works
24
NIH funding
primary concept
email

Recent publications

The Large Language Models on Biomedical Data Analysis: A Survey
IEEE Journal of Biomedical and Health Informatics 2025cited by 58position: middledoi
MULGONET: An interpretable neural network framework to integrate multi-omics data for cancer recurrence prediction and biomarker discovery
Fundamental Research 2025cited by 16position: middledoi
DeepKEGG: a multi-omics data integration framework with biological insights for cancer recurrence prediction and biomarker discovery
Briefings in Bioinformatics 2024cited by 103position: lastdoi
LGCDA: Predicting CircRNA-Disease Association Based on Fusion of Local and Global Features
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2024cited by 35position: lastdoi
Validating EmotiBit, an open-source multi-modal sensor for capturing research-grade physiological signals from anywhere on the body
Measurement Sensors 2024cited by 17position: middledoi
Deep Imputation Bi-Stochastic Graph Regularized Matrix Factorization for Clustering Single-Cell RNA-Sequencing Data
IEEE Transactions on Computational Biology and Bioinformatics 2024cited by 17position: lastdoi
Role of TAP1 in the identification of immune-hot tumor microenvironment and its prognostic significance for immunotherapeutic efficacy in gastric carcinoma
Journal of Gastrointestinal Oncology 2024cited by 4position: middledoi
Benchmarking of computational methods for predicting circRNA-disease associations
Briefings in Bioinformatics 2023cited by 39position: lastdoi
Introducing EmotiBit, an open-source multi-modal sensor for measuring research-grade physiological signals
Science Talks 2023cited by 37position: middledoi
Deep Reinforcement Learning for Online Resource Allocation in IoT Networks: Technology, Development, and Future Challenges
IEEE Communications Magazine 2023cited by 31position: lastdoi
Balanced Contrastive Learning for Long-Tailed Visual Recognition
2022 IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR) 2022cited by 197position: middledoi
GANLDA: Graph attention network for lncRNA-disease associations prediction
Neurocomputing 2021cited by 105position: lastdoi
KGANCDA: predicting circRNA-disease associations based on knowledge graph attention network
Briefings in Bioinformatics 2021cited by 98position: lastdoi
IGNSCDA: Predicting CircRNA-Disease Associations Based on Improved Graph Convolutional Network and Negative Sampling
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2021cited by 62position: middledoi
HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis
Social Cognitive and Affective Neuroscience 2020cited by 113position: middledoi
LDICDL: LncRNA-Disease Association Identification Based on Collaborative Deep Learning
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2020cited by 86position: lastdoi
CircR2Cancer: a manually curated database of associations between circRNAs and cancers
Database 2020cited by 69position: lastdoi
Survey of Network Embedding for Drug Analysis and Prediction
Current Protein and Peptide Science 2020cited by 8position: middledoi
ILDMSF: Inferring Associations Between Long Non-Coding RNA and Disease Based on Multi-Similarity Fusion
IEEE/ACM Transactions on Computational Biology and Bioinformatics 2019cited by 71position: middledoi
Identifying miRNA‐disease association based on integrating miRNA topological similarity and functional similarity
Quantitative Biology 2019cited by 11position: lastdoi
Identification of protein complexes by integrating multiple alignment of protein interaction networks
Bioinformatics 2017cited by 85position: middledoi
Bioinformatics in protein kinases regulatory network and drug discovery
Mathematical Biosciences 2015cited by 17position: lastdoi
Interval-Based Similarity for Classifying Conserved RNA Secondary Structures
IEEE Intelligent Systems 2015cited by 6position: middledoi
Exploring the effects of gene dosage on mandible shape in mice as a model for studying the genetic basis of natural variation
Development Genes and Evolution 2013cited by 36position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Wei Lan · Guangzhou University of Chinese Medicine13 papers (2019–2025)Qingfeng Chen · Shandong Normal University11 papers (2015–2025)Jianxin Wang · Zhejiang Ocean University6 papers (2019–2024)Jin Liu · Xinjiang University6 papers (2019–2024)Yi Pan · Hunan University of Traditional Chinese Medicine4 papers (2021–2025)Qingfeng Chen · Nanchang University4 papers (2021–2025)WU Xi-min · Guangxi University3 papers (2019–2021)Baoshan Chen · Guangxi University2 papers (2019–2020)Haibo Liao · Guangxi University2 papers (2024–2025)Zhentao Tang · Guangxi University2 papers (2025–2025)Wei Peng · The First Affiliated Hospital, Sun Yat-sen University2 papers (2021–2025)Nitin Nair · New York University2 papers (2023–2024)Dehuan Lai · Guangxi University2 papers (2019–2020)Chengqi Zhang · Ministry of Education of the People's Republic of China2 papers (2015–2015)Yi Dong · University of Liverpool2 papers (2021–2023)Baoshan Chen · Guangxi University1 papers (2020–2020)Baoshan Chen · Guangxi University1 papers (2020–2020)Zhu Lingzhi · North China Electric Power University1 papers (2024–2024)Yu Zheng · Southwest University1 papers (2024–2024)Brian C. Schutte · Michigan State University1 papers (2013–2013)