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José M. Álvarez

New York University · US
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Area of research
Plant Science · Molecular Biology
Research interest
Research focused on Computational biology and Transcription factor, with related work in Arabidopsis, Transcriptome, Gene. Notable publications include 'Nitrate in 2020: Thirty Years from Transport to Signaling Networks', 'Fungal Planet description sheets: 281–319', and 'Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade'.
h-index
citations
1,333
works
12
NIH funding
primary concept
email

Recent publications

Two antagonistic gene regulatory networks drive Arabidopsis root hair growth at low temperature linked to a low‐nutrient environment
New Phytologist 2025cited by 8position: middledoi
Nitrogen sensing and regulatory networks: it's about time and space
The Plant Cell 2024cited by 36position: middledoi
Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate
Proceedings of the National Academy of Sciences 2022cited by 49position: middledoi
Time-Based Systems Biology Approaches to Capture and Model Dynamic Gene Regulatory Networks
Annual Review of Plant Biology 2021cited by 42position: firstdoi
Nitrate in 2020: Thirty Years from Transport to Signaling Networks
The Plant Cell 2020cited by 386position: middledoi
Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade
Nature Communications 2020cited by 168position: firstdoi
A balancing act: how plants integrate nitrogen and water signals
Journal of Experimental Botany 2020cited by 96position: middledoi
Nutrient dose-responsive transcriptome changes driven by Michaelis–Menten kinetics underlie plant growth rates
Proceedings of the National Academy of Sciences 2020cited by 76position: middledoi
ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks
PLANT PHYSIOLOGY 2020cited by 59position: middledoi
Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions
Nature Communications 2019cited by 150position: middledoi
Mapping transcription factor interactome networks using HaloTag protein arrays
Proceedings of the National Academy of Sciences 2016cited by 79position: middledoi
Fungal Planet description sheets: 281–319
Persoonia - Molecular Phylogeny and Evolution of Fungi 2014cited by 184position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Gloria M. Coruzzi · New York University9 papers (2019–2024)Rodrigo A. Gutiérrez · Palo Alto University6 papers (2016–2024)Matthew D. Brooks · Urbana University6 papers (2019–2024)Angelo Pasquino · New York University4 papers (2019–2022)Gabriel Krouk · New York University4 papers (2019–2024)Joseph Swift · Salk Institute for Biological Studies4 papers (2019–2021)Viviana Araus · New York University3 papers (2020–2020) · 2 papers (2020–2022) · 2 papers (2020–2022)Che-Lun Juang · New York University2 papers (2019–2020)Kranthi Varala · New York University2 papers (2019–2020)Jacopo Cirrone · New York University2 papers (2019–2020)Carly M. Shanks · New York University2 papers (2020–2024)Sandrine Ruffel · New York University2 papers (2020–2024)Pascal Falter‐Braun · Helmholtz Zentrum München1 papers (2016–2016)Amelia Henry · Pennsylvania State University1 papers (2020–2020)Fernando Alemán · Scripps Research Institute1 papers (2016–2016) · 1 papers (2020–2020)Rosa Quan · Salk Institute for Biological Studies1 papers (2016–2016)Joanne Chory · Salk Institute for Biological Studies1 papers (2016–2016)
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