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David M. Miller

Vanderbilt University · US
Area of research
Aging · Endocrine and Autonomic Systems
Research interest
Research interests include Genetics, Aging, and Longevity in Model Organisms, Circadian rhythm and melatonin, Neurobiology and Insect Physiology Research, and RNA Research and Splicing.
h-index
52
citations
12,148
works
151
NIH funding
primary concept
Biology
email

Recent publications

Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
eLife 2026cited by 1position: middledoi
The forkhead transcription factor FKH-7/FOXP acts in C. elegans chemosensory neurons to shape a life history strategy.
2026cited by 0position: contributordoi
Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
eLife 2025cited by 3position: middledoi
Detecting gene expression in Caenorhabditis elegans.
2025cited by 3position: contributordoi
Integrating bulk and single cell RNA-seq refines transcriptomic profiles of individual C. elegans neurons
eLife 2025cited by 2position: middledoi
The forkhead transcription factor FKH-7/FOXP acts in chemosensory neurons to regulate developmental decision-making
2025cited by 1position: contributordoi
A molecular atlas of adult C. elegans motor neurons reveals ancient diversity delineated by conserved transcription factor codes
Cell Reports 2024cited by 34position: middledoi
Alternative splicing across the <i>C. elegans</i> nervous system
2024cited by 4position: contributordoi
The neuropeptidergic connectome of C. elegans
Neuron 2023cited by 165position: middledoi
The epithelial Na+ channel UNC-8 promotes an endocytic mechanism that recycles presynaptic components to new boutons in remodeling neurons
Cell Reports 2023cited by 14position: lastdoi
Molecular topography of an entire nervous system
Cell 2021cited by 761position: lastdoi
In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the C. elegans nervous system
eLife 2021cited by 31position: middledoi
In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the <i>C. elegans</i> nervous system.
2021cited by 26position: contributordoi
Transcriptional Control of Parallel-Acting Pathways That Remove Specific Presynaptic Proteins in Remodeling Neurons
Journal of Neuroscience 2021cited by 15position: lastdoi
A head-to-head comparison of ribodepletion and polyA selection approaches for Caenorhabditis elegans low input RNA-sequencing libraries.
2021cited by 11position: contributordoi
Author response: In silico analysis of the transcriptional regulatory logic of neuronal identity specification throughout the C. elegans nervous system
2021cited by 0position: contributordoi
Synaptic remodeling, lessons from <i>C. elegans</i>.
2020cited by 18position: contributordoi
Transcriptional control of parallel-acting pathways that remove discrete presynaptic proteins in remodeling neurons
2020cited by 1position: contributordoi
Epidermal Growth Factor Signaling Promotes Sleep through a Combined Series and Parallel Neural Circuit
Current Biology 2019cited by 118position: middledoi
NATF (Native and Tissue-Specific Fluorescence): A Strategy for Bright, Tissue-Specific GFP Labeling of Native Proteins in <i>Caenorhabditis elegans</i>.
2019cited by 53position: contributordoi
<i>C. elegans</i> neurons have functional dendritic spines.
2019cited by 31position: contributordoi
Actin assembly and non-muscle myosin activity drive dendrite retraction in an UNC-6/Netrin dependent self-avoidance response.
2019cited by 26position: contributordoi
Author response: C. elegans neurons have functional dendritic spines
2019cited by 0position: contributordoi
The CeNGEN Project: The Complete Gene Expression Map of an Entire Nervous System
Neuron 2018cited by 171position: middledoi
Food Sensation Modulates Locomotion by Dopamine and Neuropeptide Signaling in a Distributed Neuronal Network
Neuron 2018cited by 114position: middledoi
A Dendritic Guidance Receptor Complex Brings Together Distinct Actin Regulators to Drive Efficient F-Actin Assembly and Branching
Developmental Cell 2018cited by 87position: middledoi
The DEG/ENaC cation channel protein UNC-8 drives activity-dependent synapse removal in remodeling GABAergic neurons
eLife 2016cited by 42position: lastdoi
Transcriptional Control of Synaptic Remodeling through Regulated Expression of an Immunoglobulin Superfamily Protein
Current Biology 2015cited by 39position: lastdoi
Comparative analysis of the transcriptome across distant species
Nature 2014cited by 320position: middledoi
Sensory Neuron Fates Are Distinguished by a Transcriptional Switch that Regulates Dendrite Branch Stabilization
Neuron 2013cited by 130position: lastdoi

Grants

Incubating the Use of Artificial Intelligence for Conducting High-Quality Research Syntheses
NSF2425651$499,9282024–2026PIRePORTER
Broadening the Discovery Potential of the LHC: Instrumentation, Algorithms, and Training for Physics with the ATLAS Experiment and Direct Axion Detection
NSF2310094$2,900,0002023–2027PIRePORTER
Collaborative Research: How to get SMAL: Studying island dwarfism to find Shared Molecular mechanisms Across Life history traits
NSF2222088$299,0442023–2027PIRePORTER
RAPID: Understanding and Supporting K-12 School Leaders' AI-related Decision-making
NSF2333764$189,9902023–2025PIRePORTER
Collaborative Research: SaTC: EDU: Dual-track Role-based Learning for Cybersecurity Analysts and Engineers for Effective Defense Operation with Data Analytics
NSF2228002$130,5572023–2027PIRePORTER
ECR Hub: Advancing the Long-Term Potential of Fundamental Research
NSF2208422$5,456,7632022–2027PIRePORTER
Identifying and Reducing Gender Bias in STEM: Systematically Synthesizing the Experimental Evidence
NSF2055422$1,067,4112021–2025PIRePORTER
Improving Undergraduates’ Motivation and Retention in STEM Through Classroom Interventions: A Meta-Analysis
NSF2110368$500,0002021–2026PIRePORTER
Building for Future Discoveries: Instrumentation, Algorithms, and Training for Physics with the ATLAS Experiment
NSF2013010$3,127,9772020–2024PIRePORTER
The Development of Gender Stereotypes About STEM Abilities: A Meta-Analysis
NSF1920401$499,8312019–2024PIRePORTER
Collaborative Research: Implementing Multi-institutional Classroom-based Undergraduate Research Experiences to Study the Impact of Environmental Changes on Salamander Populations
NSF1914791$64,0002019–2023PIRePORTER
CAREER: Boosting Signals for Hidden Supersymmetry with the ATLAS Hadronic Calorimeter
NSF1454815$985,5952015–2020PIRePORTER
BOOST 2015 Workshop Hosted by the Enrico Fermi Institute at the University of Chicago; Chicago, IL; August 10-14, 2015.
NSF1506139$7,0002015–2016PIRePORTER
Development of a Biology-Based Sperm Storage System
NSF1450227$299,9842014–2016PIRePORTER
Searches for New Physics with Heavy-Flavor Rich Hadronic Final States in the Post-Higgs Era
NSF1404465$155,0002014–2015PIRePORTER
Role of Excited Species in Plasma Enhanced Combustion
NSF0755632$412,1892008–2012PIRePORTER
Support for the Fourth Joint Meeting of the United States Sections of the Combustion Institute; Philadelphia, PA; March 20-23, 2005
NSF0456579$10,5002005–2006PIRePORTER
NEXT STEP: Recruiting and Supporting Associate Degree
NSF0422467$99,9012004–2009PIRePORTER
Acquisition of a Gas Chromatograph with Mass Selective Detector
NSF0214654$60,9802002–2003PIRePORTER
Collaborative Research: Implementation of Tabu Search for the Design of Novel Molecules using Parallel Computers
NSF0224887$50,0002002–2003PIRePORTER
Maximum Entropy Model Learning for Classification and More General Inference Tasks: Large-scale Applications and Extensions
NSF0082214$248,7812000–2005PIRePORTER
Collaborative Research: Vertical Divergence of Turbulent and Radiative Fluxes and Influence of Mesoscale Motions on Turbulence Intermittency
NSF9907092$90,1211999–2002PIRePORTER

Frequent collaborators

· 12 papers (2019–2026)Oliver Hobert · Vanderbilt University8 papers (2018–2025)Marc Hammarlund · Yale University8 papers (2018–2026)Seth R. Taylor · Brigham Young University7 papers (2021–2026)Alexis Weinreb · Yale University5 papers (2021–2026)Molly B. Reilly · Howard Hughes Medical Institute5 papers (2021–2026)Rebecca McWhirter · Vanderbilt University4 papers (2015–2021)Alec Barrett · Yale University4 papers (2021–2026)Andrea Cuentas-Condori · Vanderbilt University4 papers (2019–2020)Abigail Poff · Vanderbilt University4 papers (2021–2026)Cyril Cros · Howard Hughes Medical Institute4 papers (2021–2026) · 4 papers (2023–2026)Alexander Gottschalk · Goethe University Frankfurt4 papers (2012–2019)Erdem Varol · University of Pennsylvania4 papers (2021–2026)Eviatar Yemini · University of Alabama at Birmingham4 papers (2021–2025) · 3 papers (2025–2026)Berta Vidal · Howard Hughes Medical Institute3 papers (2021–2025)Sierra D. Palumbos · University of Pennsylvania3 papers (2019–2020)Sierra Palumbos · California University of Pennsylvania3 papers (2018–2021)HaoSheng Sun · Howard Hughes Medical Institute3 papers (2023–2025)