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David Lee

Boston University · US
Area of research
Molecular Biology
Research interest
Research interests include Machine Learning in Bioinformatics, Genomics and Phylogenetic Studies, Bioinformatics and Genomic Networks, and Protein Structure and Dynamics.
h-index
32
citations
5,034
works
144
NIH funding
—
primary concept
—
email
✉ Find email ↗

Recent publications

Endoscopic Ultrasound–Guided Portosystemic Pressure Gradient Correlates With Clinical Parameters and Liver Histology
Clinical Gastroenterology and Hepatology 2025cited by 18position: middledoi
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Genome biology 2016cited by 450position: middledoi
The Effect of Sharrows, Painted Bicycle Lanes and Physically Protected Paths on the Severity of Bicycle Injuries Caused by Motor Vehicles
Safety 2016cited by 40position: middledoi
RNA-Seq identifies SPGs as a ventral skeletal patterning cue in sea urchins
Development 2016cited by 39position: middledoi
CATH: comprehensive structural and functional annotations for genome sequences
Nucleic Acids Research 2014cited by 437position: middledoi
Modeling biological circuits with urn functions
2012cited by 2position: firstdoi

Grants

RII Track-4:@NSF: Surrogate-based Optimal Atmospheric Entry Guidance using High-fidelity Simulation Data
NSF2327379$207,4022024–2026PIRePORTER
SBIR Phase I: Manufacturing of gallium nitride (GaN) membranes for efficient thermal management
NSF2135112$256,0002022–2023PIRePORTER
Quantum phenomena in condensed atomic and molecular hydrogen
NSF2104756$555,8192021–2026PIRePORTER
Studies of Atomic Hydrogen Contained in Solid Molecular Hydrogen Isotopes
NSF1707565$620,5302017–2021PIRePORTER
SBIR Phase II: Intraoperative Detection and Ablation of Microscopic Residual Cancer in the Tumor Bed
NSF1152489$994,1682012–2017PIRePORTER
Materials World Network: Quantum Phenomena in Atomic Hydrogen Stabilized in Solid Molecular Hydrogen
NSF1209255$500,0002012–2017PIRePORTER
SBIR Phase I: Intraoperative Detection and Ablation of Microscopic Residual Cancer in the Tumor Bed
NSF1046761$147,5052011–2011PIRePORTER
Quantum Phenomena in Systems Containing Matrix Isolated Atomic Free Radicals
NSF0504683$455,0002005–2009PIRePORTER
ICER Midwest Workshop: Preparing IT Graduates for 2010 and Beyond
NSF0548403$99,5842005–2006PIRePORTER
SBIR Phase I: Development of 802.11 Asset Tag
NSF0338663$98,2602004–2004PIRePORTER
U.S.-France Cooperative Research: Nuclear Magnetic Properties of Superfluid 3He in Bulk and Confined Geometries
NSF0128811$19,8002002–2007PIRePORTER
Collective Mode Dynamics in Superfluid 3He
NSF9701710$300,0001997–2001PIRePORTER
US-India Cooperative Research: The Effect of Light Quantity and Quality on the Developmental Ecology of Indian Tropical Forest Trees
NSF9712753$28,3201997–2001PIRePORTER
Collective Phenomena in Quantum Fluids
NSF9300044$375,0001993–1997PIRePORTER
The Effects of Light Quality and Quantity on the Developmental Ecology of Malaysian Rainforest Trees
NSF9020137$124,0711991–1994PIRePORTER
Development of a Scientific Proposal on Developmental Ecology- Travel Award in Indian Currency.
NSF9022873$2,7001991–1992PIRePORTER
Quantum Fluids and Solids
NSF8921733$1,135,0001990–1994PIRePORTER
Spin Waves and Other Phenomena in Quantum Fluids
NSF9011562$265,0001990–1994PIRePORTER

Frequent collaborators

Sonja Lehtinen · University of Lausanne1 papers (2014–2014)Jessica H. Heyer · New York University1 papers (2016–2016)Monica Sethi · New York University1 papers (2016–2016)Stephen P. Wall · New York University1 papers (2016–2016)Romain A. Studer · European Bioinformatics Institute1 papers (2014–2014)Roman A. Laskowski · European Bioinformatics Institute (EMBL-EBI)1 papers (2014–2014)Jonathan Lees · European Bioinformatics Institute1 papers (2014–2014)Ian Sillitoe · Institute of Structural and Molecular Biology1 papers (2014–2014)Alison Cuff · European Bioinformatics Institute1 papers (2014–2014)Jehoshua Bruck · California Institute of Technology1 papers (2012–2012)Patricia Ayoung-Chee · New York University1 papers (2016–2016)— · 1 papers (2014–2014)Nicholas Furnham · London School of Hygiene & Tropical Medicine1 papers (2014–2014)Spiros Frangos · New York University1 papers (2016–2016)Janet M. Thornton · European Bioinformatics Institute (EMBL-EBI)1 papers (2014–2014)Tony E. Lewis · European Bioinformatics Institute1 papers (2014–2014)Christine Orengo · Institute of Structural and Molecular Biology1 papers (2014–2014)Charles DiMaggio · New York University1 papers (2016–2016)— · 1 papers (2014–2014)Natalie L. Dawson · European Bioinformatics Institute1 papers (2014–2014)