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Theodore Sakellaropoulos

New York University · US
Area of research
Hematology · Computational Theory and Mathematics
Research interest
Research interests include Biology, Chromatin, Computational biology, CTCF, Genetics, and Lung cancer.
h-index
citations
4,216
works
15
NIH funding
primary concept
email

Recent publications

Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation
Cell Genomics 2025cited by 15position: middledoi
Self-supervised learning reveals clinically relevant histomorphological patterns for therapeutic strategies in colon cancer
Nature Communications 2025cited by 8position: middledoi
The stress response regulator HSF1 modulates natural killer cell anti-tumour immunity
Nature Cell Biology 2024cited by 11position: middledoi
Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening
Nature Biotechnology 2023cited by 124position: middledoi
Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma
Nature Communications 2023cited by 25position: middledoi
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization
Molecular Cell 2021cited by 134position: middledoi
Deep Learning and Pathomics Analyses Reveal Cell Nuclei as Important Features for Mutation Prediction of BRAF-Mutated Melanomas
Journal of Investigative Dermatology 2021cited by 48position: middledoi
Targeting Mitochondrial Structure Sensitizes Acute Myeloid Leukemia to Venetoclax Treatment
Cancer Discovery 2019cited by 338position: middledoi
A Deep Learning Framework for Predicting Response to Therapy in Cancer
Cell Reports 2019cited by 212position: firstdoi
Machine learning and data mining frameworks for predicting drug response in cancer: An overview and a novel in silico screening process based on association rule mining
Pharmacology & Therapeutics 2019cited by 124position: middledoi
NSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domains
Nature Communications 2019cited by 80position: middledoi
MAPK pathway and B cells overactivation in multiple sclerosis revealed by phosphoproteomics and genomic analysis
Proceedings of the National Academy of Sciences 2019cited by 61position: middledoi
EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation
Genome biology 2019cited by 43position: middledoi
Classification and mutation prediction from non–small cell lung cancer histopathology images using deep learning
Nature Medicine 2018cited by 2,840position: middledoi
Stratification of TAD boundaries reveals preferential insulation of super-enhancers by strong boundaries
Nature Communications 2018cited by 153position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Aristotelis Tsirigos · NYU Langone Health12 papers (2018–2025)Iannis Aifantis · NYU Langone Health7 papers (2018–2024)Jane A. Skok · NYU Langone Health4 papers (2019–2025)Priscillia Lhoumaud · New York University3 papers (2019–2025)Alexander Polyzos · Cornell University3 papers (2019–2021) · 3 papers (2019–2019)Nicolas Coudray · New York University3 papers (2018–2025)Andreas Kloetgen · New York University3 papers (2019–2021)David Fenyö · Saint Louis University3 papers (2018–2023)Sonali Narang · New York University3 papers (2019–2019)Petros P. Sfikakis · Harbor–UCLA Medical Center2 papers (2019–2019)Filippos Koinis · National and Kapodistrian University of Athens2 papers (2019–2019)Vassilis G. Gorgoulis · RGenix (United States)2 papers (2019–2019)Effie Apostolou · Cornell University2 papers (2019–2021) · 2 papers (2019–2019)Hua Zhou · Dalian Medical University2 papers (2019–2024)Russell Petty · University of Dundee2 papers (2019–2019)Dafne Campigli Di Giammartino · Cornell University2 papers (2019–2021)Athanassios Kotsinas · Indiana University School of Medicine2 papers (2019–2019)Rebecca C. Fitzgerald · Cancer Research UK2 papers (2019–2019)