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Sibei Xu

University of California San Diego · US
Area of research
Molecular Biology · Genetics
Research interest
Research interests include Bacterial Genetics and Biotechnology, Microbial Metabolic Engineering and Bioproduction, RNA and protein synthesis mechanisms, and Evolution and Genetic Dynamics.
h-index
14
citations
989
works
22
NIH funding
primary concept
email

Recent publications

Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of <i>Escherichia coli</i>
Genome Biology and Evolution 2025cited by 5position: middledoi
Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility
mSphere 2021cited by 21position: middledoi
Revealing 29 sets of independently modulated genes in <i>Staphylococcus aureus</i> , their regulators, and role in key physiological response
Proceedings of the National Academy of Sciences 2020cited by 97position: middledoi
The Escherichia coli transcriptome mostly consists of independently regulated modules
Nature Communications 2019cited by 263position: middledoi
Adaptive evolution reveals a tradeoff between growth rate and oxidative stress during naphthoquinone-based aerobic respiration
Proceedings of the National Academy of Sciences 2019cited by 76position: middledoi
OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States
Molecular Biology and Evolution 2019cited by 74position: middledoi
Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism
Nature Communications 2018cited by 77position: middledoi
Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System
Metabolic Engineering 2018cited by 60position: middledoi
Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes
Metabolic Engineering 2018cited by 54position: middledoi

Grants

No grants ingested yet.

Frequent collaborators

Bernhard Ø. Palsson · Novo Nordisk Foundation9 papers (2018–2025)Richard Szubin · University of California San Diego9 papers (2018–2025)Adam M. Feist · Novo Nordisk Foundation7 papers (2018–2025)Ying Hefner · University of California San Diego7 papers (2018–2025)Anand V. Sastry · University of California San Diego5 papers (2019–2021)Troy E. Sandberg · University of California San Diego5 papers (2018–2025)Connor A. Olson · University of California San Diego4 papers (2019–2025)Amitesh Anand · Tata Institute of Fundamental Research4 papers (2019–2021)Douglas McCloskey · Novo Nordisk Foundation3 papers (2018–2018)Saugat Poudel · University of California, San Diego3 papers (2019–2021)Laurence Yang · Queen's University3 papers (2019–2019)Yara Seif · University of California San Diego3 papers (2019–2020)Elizabeth Brunk · University of North Carolina at Chapel Hill3 papers (2018–2018)Ye Gao · Shanxi Medical University2 papers (2019–2025)Edward Catoiu · University of California San Diego2 papers (2019–2025)Victor Nizet · CNR de la Résistance aux Antibiotiques2 papers (2020–2021)Joe Pogliano · University of California San Diego1 papers (2020–2020)Arjun Patel · University of California San Diego1 papers (2025–2025)Nicholas Dillon · The University of Texas at Dallas1 papers (2021–2021)Ke Chen · University of California San Diego1 papers (2025–2025)