Area of research
Molecular Biology · Plant Science
Research interest
Research interests include Genomics and Phylogenetic Studies, RNA and protein synthesis mechanisms, Chromosomal and Genetic Variations, and Machine Learning in Bioinformatics.
Author Correction: Metagenome analysis using the Kraken software suite.
Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling
Genome Report: A reference genome sequence for the exceptionally long-lived Great Basin bristlecone pine, Pinus longaeva.
Annotating genomes at increased scale and resolution.
Comparison of unbiased metagenomic next generation sequencing to targeted multiplex diagnostic assays for the detection of respiratory viruses.
Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling.
Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling
Author Response: Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling
A complete diploid human genome benchmark for personalized genomics
Comprehensive analysis of microbial content in whole-genome sequencing samples from The Cancer Genome Atlas project.
Combining DNA and protein alignments to improve genome annotation with LiftOn.
PSAURON: a tool for assessing protein annotation across a broad range of species.
Translon: a single term for translated regions
Translon: a single term for translated regions
Efficient evidence-based genome annotation with EviAnn
Challenges and Opportunities in Analyzing Cancer-Associated Microbiomes.
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
Conservation assessment of human splice site annotation based on a 470-genome alignment.
OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species.
Evidence of off-target probe binding affecting 10x Genomics Xenium gene panels compromise accuracy of spatial transcriptomic profiling
Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling
Comprehensive Transcriptome Annotation of Thousands of HIV-1 Genomes
Reply to Austin and Korem, "Compositional transformations can reasonably introduce phenotype-associated values into sparse features".
TD2: finding protein coding regions in transcripts
Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons.
Phenotype to genotype: A new and rapid approach using whole-genome sequencing.
Isoswitching drives the aging process in human brains
OpenSpliceAI provides an efficient modular implementation of SpliceAI enabling easy retraining across nonhuman species
Author response: Evidence of off-target probe binding in the 10x Genomics Xenium v1 Human Breast Gene Expression Panel compromises accuracy of spatial transcriptomic profiling
OpenSpliceAI: An efficient, modular implementation of SpliceAI enabling easy retraining on non-human species
RESEARCH-PGR: Algorithms and Tools for Improving Genome Assemblies
Bioinformatics Analysis of Regulatory Sites in Genomic DNA Sequences
A high-speed network connection for genomics research
2003 Computational Genomics Conference
The Fifth Annual Computational Genomics Conference at TIGR, to be held at the Renaissance Harborplace Hotel in Baltimore, MD, November 29, 2001 through December 1, 2001
Collaborative Research: Interpolated Markov Models for DNA Sequence Analysis
Finding Genes in DNA using Machine Learning Algorithms
CISE Research Instrumentation: Distributed Data Mining in Large Databases
A Proposal to Study the Applicability of Astronomical Image Processing Methods to Low Contrast Digital Images
Knowledge Discovery for Molecular Biology: Algorithms and Experiments